Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02104 ATGGCAGCATCTTCATCTCCTCGATCGCCTTTTACGTCGCAAACTATTAACGACGAAAATAATAGTTCTATGAAAGAAACAACAACTTCTTCATCCATAAGCAAAATCAGTCCACTGATTTTGCTAGTTATAATAGTATTAGCAATTATCTTTTTTCTCTATGGACTTGTCCAGTTAATTTTATGGTTACTGATGAAAAGGCCATCCTCTTCATCTCATTATAATTCCAACAGATTCCAAGAATCGGCCCGAACCCGATCTCTTCAGAGGCAACTACAACACTTATTCCACTTGCATGATTCAGGTCTTGACCAAGCTTTCATTAACACTCTTCCTGTTTTCAACTACCAAGATTTATTGGGTTTGAAGGAGCCTTTTGATTGTGCTGTGTGTCTCTGTGAGTTTTCTGAACAAGATAAGCTGAGATTGGTTCCTATATGCAGCCATGCATTTCATATGAATTGTCTTGACACATGGCTTCTCTCAAATTCTACTTGTCCTCTTTGTAGAGCAAATATCTCCAACAATAGTTTCCCTTTGGAGAATGTTAATGTTGTCGAGGATTCTTTGGTTTTGTCACATAGGTTCAATGTCAATGGTGATAAAGAGAATAGTATTATTGAGGATAATCAAATAGGTGACAAAAGGGTGTTTTCTGTGAAGCTGGGAAAATTCAGAAGTAATGGATTGGAGAATGGTAGTACTAGTAGTTGTAGTTTGGATGAAAGGAGATGTTATTCAATGGGTTCATATCAGTATGTGTTTTGTGATTCAAATTTGCAAGTGGTTTTGTCTCAATCTTATTGTGAAGAAGATGAAAATGGGAATGTGGAGGGGAAGAGGATAGGGAATAGAATCAAAGGTGAGAGTTTTTCTGTTTCTAAGATATGGCTTTGGTCTAAGAAGAGCAACATTCCTAGTTCTAATACTGTTTTTCCTTGA 942 0.3673 MAASSSPRSPFTSQTINDENNSSMKETTTSSSISKISPLILLVIIVLAIIFFLYGLVQLILWLLMKRPSSSSHYNSNRFQESARTRSLQRQLQHLFHLHDSGLDQAFINTLPVFNYQDLLGLKEPFDCAVCLCEFSEQDKLRLVPICSHAFHMNCLDTWLLSNSTCPLCRANISNNSFPLENVNVVEDSLVLSHRFNVNGDKENSIIEDNQIGDKRVFSVKLGKFRSNGLENGSTSSCSLDERRCYSMGSYQYVFCDSNLQVVLSQSYCEEDENGNVEGKRIGNRIKGESFSVSKIWLWSKKSNIPSSNTVFP 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02104 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 178 IPR013083 -
Vivi1g02104 313 MobiDBLite consensus disorder prediction 1 26 - -
Vivi1g02104 313 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Vivi1g02104 313 SMART ring_2 128 169 IPR001841 -
Vivi1g02104 313 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 32 297 - -
Vivi1g02104 313 FunFam E3 ubiquitin-protein ligase ATL6 90 176 - -
Vivi1g02104 313 CDD RING-H2_EL5-like 127 170 - -
Vivi1g02104 313 Pfam Ring finger domain 127 170 IPR001841 -
Vivi1g02104 313 SUPERFAMILY RING/U-box 107 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02104 Vivi-Chr1 44495129 44496264 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02104 27 302 C3H Transcription Factor Family AT2G18650 41.617 3.96e-50 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02104 - - vvo:131605164 580.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02104 1 44495129 44496264 Vivi1g02104 1 44495129 44496264 ECH