Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02078 ATGGCTTCTTCCTCAGATCCTCCTTCCTCCAGACACCACACCTACGACCGTAAACAAAAATCCCTCGGCCTCTTATGCACCAATTTCTTGAGCTTGTACAATCGAGACAACGTTCATTTAGTCGGTCTCGACGACGCTGCCGCCAGATTAGGTGTTGAGAGAAGACGGATCTATGATATTGTCAATGTTCTGGAGAGCATTGGGGTTCTTGCAAGAAAGGCCAAGAACCAATACACGTGGAAAGGGTTTGGGGCGATTCCTGTTGCTTTGCAGGAGCTCAAGGAAGAGGGTTTATGGAAGAATTTCAATTCACAAGAAGGTGGCAACGAGGATGTAAAGATATCGGATGAAGATGATGAGGAAGAATCATATTCCCAACCCAATGGAAGTCAGAGTGAATCATTATCATTATCCCAAACCAATGGAAGTCAAACCAATGGAAGTCAGACCAATGGAAGTCAGAGTGACAGTCTCAACCCTAGTTCTTGTTTTCCCAGAGCTCTGAAAAATGATAGAAGAGAAAAATCTTTGGCGCTGCTTACTCAGAATTTTGTCAAGCTTTTTGTCTGCTCCAATCTGGAAATGATATCCCTTGATGATGCAGCGAGATTGTTGCTTGGAGATGCATACAATTCATCAACAATGCGAACAAAAGTTAGACGCCTTTATGATATTGCAAATGTCCTAACCTCCATGAATCTGATCGAGAAGACACATACCACTGATACACGAAAACCAGCATTCAGGTGGCTAGGCTTGAAAGGGAAAACTTGGAACGAGGCATCGCTTTACAACTCACATCAAAACGAGTCTAAAAAACGAGCATTTGGAAATGATGTCACAAACATTAGCTTCACGAGGAACAGATCAGATTTGTTCATGGGTGGAGACTTCAGCCAGAGCTTTAAGAAGCAAAAGACAATGGAAAATGACAGCGGGCTTGGTCAGGAAGATAAAAAGCAGACTTCAGCAAACTATCAATTCGGTCCTTTTGCTCCGGCCTTCGTGTCCAAATCCGGAACTTCTGAGAACACTAAAGCGAAGCAGGTGCATGATTGGGAGAGTCTAGCAACTGAACATTCCCCTCAGTATCAAAATCAAGGCAATTAA 1110 0.4342 MASSSDPPSSRHHTYDRKQKSLGLLCTNFLSLYNRDNVHLVGLDDAAARLGVERRRIYDIVNVLESIGVLARKAKNQYTWKGFGAIPVALQELKEEGLWKNFNSQEGGNEDVKISDEDDEEESYSQPNGSQSESLSLSQTNGSQTNGSQTNGSQSDSLNPSSCFPRALKNDRREKSLALLTQNFVKLFVCSNLEMISLDDAARLLLGDAYNSSTMRTKVRRLYDIANVLTSMNLIEKTHTTDTRKPAFRWLGLKGKTWNEASLYNSHQNESKKRAFGNDVTNISFTRNRSDLFMGGDFSQSFKKQKTMENDSGLGQEDKKQTSANYQFGPFAPAFVSKSGTSENTKAKQVHDWESLATEHSPQYQNQGN 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02078 369 SMART E2F_TDP_2 172 252 IPR003316 GO:0005667|GO:0006355
Vivi1g02078 369 SMART E2F_TDP_2 17 82 IPR003316 GO:0005667|GO:0006355
Vivi1g02078 369 MobiDBLite consensus disorder prediction 101 165 - -
Vivi1g02078 369 PANTHER TRANSCRIPTION FACTOR E2F 7 365 IPR015633 GO:0000978|GO:0006357
Vivi1g02078 369 SUPERFAMILY "Winged helix" DNA-binding domain 174 253 IPR036390 -
Vivi1g02078 369 MobiDBLite consensus disorder prediction 125 164 - -
Vivi1g02078 369 Gene3D - 12 85 IPR036388 -
Vivi1g02078 369 Gene3D - 167 254 IPR036388 -
Vivi1g02078 369 MobiDBLite consensus disorder prediction 305 369 - -
Vivi1g02078 369 FunFam E2F transcription factor 8 12 84 - -
Vivi1g02078 369 SUPERFAMILY "Winged helix" DNA-binding domain 16 80 IPR036390 -
Vivi1g02078 369 FunFam E2F transcription factor-like E2FE 167 254 - -
Vivi1g02078 369 Pfam E2F/DP family winged-helix DNA-binding domain 174 252 IPR003316 GO:0005667|GO:0006355
Vivi1g02078 369 Pfam E2F/DP family winged-helix DNA-binding domain 18 82 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02078 Vivi-Chr1 44034849 44037910 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02078 12 367 E2F-DP Transcription Factor Family AT3G48160 53.846 1.87e-114 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vivi1g02078 E2F_TDP 9.4e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02078 K09391 - gmx:100795252 467.233