Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02062 ATGTCTTCTCCCTCATCGGCCGCCGTCTCTGGCGAATTCATGCTGTTCGGAGTTAGAGTAGTGGTTGATTCTATGAGGAAGAGTGTTAGCATGAACAATCTCTCACAGTACGAACAACCTCTCGACAACAGCAACAACAATATCAAGGACGATAATAACAAAGACGCTATCGCCGCCGGTTACGCCTCCGCTGACGACGCTGTTCCGAATAACTCCGCCAGGAACCGCGAACGCGAGCGTAAACGAGGAATTCCGTGGACGGAGGAAGAGCACAAGCTGTTCTTGGTTGGATTGCAGAAAGTAGGGAAAGGTGATTGGAGAGGAATCTCTAGGAACTACGTGAAAACGCGAACGCCGACGCAGGTTGCTAGTCATGCTCAGAAGTATTTTCTCCGGCGGAGTAACCTCAATCGCCGCCGCCGTAGATCTAGTCTCTTTGATATCACCACCGACTCGGTGTCTGCTATTCCGATGGAGGAAGATCAGGTGAAGAATCAAGACAGTGTTTCACAAGTACAGCCCATGTGTCCTGCAGCCCCTGAAACTAGAAAAAGCAATGGATTTCCTTTTATGTCAGTATATCATTTGGGTGTTGATGAGAGTCCAATGGAAGAACTCACTCTAGGACAAGGAACTGCTAAACAAAATTTCACAACCAATCTATTCCATCCAATTCCTTTTGTTGTTTCAGATCCTAAAGCTTCCACTGTGTCTGATATCACCTCTAGTTCAAGTTCATCTATTGAACCTCCAACTCTCTCACTCGGGCTTTCCTTCTCATCTGATCTAAGGAAGACATCGTCAACACACTCAACTTTACACGCAATGCCATGTTTCAACAATGGTGATAACATCATAAGCGTTGCTTAA 870 0.4632 MSSPSSAAVSGEFMLFGVRVVVDSMRKSVSMNNLSQYEQPLDNSNNNIKDDNNKDAIAAGYASADDAVPNNSARNRERERKRGIPWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDSVSAIPMEEDQVKNQDSVSQVQPMCPAAPETRKSNGFPFMSVYHLGVDESPMEELTLGQGTAKQNFTTNLFHPIPFVVSDPKASTVSDITSSSSSSIEPPTLSLGLSFSSDLRKTSSTHSTLHAMPCFNNGDNIISVA 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02062 289 NCBIfam myb-like DNA-binding domain, SHAQKYF class 81 132 IPR006447 GO:0003677
Vivi1g02062 289 Gene3D - 84 136 - -
Vivi1g02062 289 FunFam transcription factor MYB1R1 84 135 - -
Vivi1g02062 289 CDD SANT 85 130 IPR001005 -
Vivi1g02062 289 MobiDBLite consensus disorder prediction 61 82 - -
Vivi1g02062 289 SUPERFAMILY Homeodomain-like 80 135 IPR009057 -
Vivi1g02062 289 PANTHER TRANSCRIPTION FACTOR KUA1 12 230 - -
Vivi1g02062 289 ProSiteProfiles Myb-like domain profile. 78 130 IPR001005 -
Vivi1g02062 289 SMART sant 82 132 IPR001005 -
Vivi1g02062 289 Pfam Myb-like DNA-binding domain 85 130 IPR001005 -
Vivi1g02062 289 ProSiteProfiles SANT domain profile. 86 134 IPR017884 -
Vivi1g02062 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 134 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02062 Vivi-Chr1 43616273 43618394 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi1g02062 Myb_DNA-binding 1.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02062 - - psat:127073868 489.574