Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02057 ATGGAGCATCCTCTCATCAACGATTGCACTTTCTCTTCTGCTAATCCTTCTTTATCAGAAATTTGGCCTCATTTCTCATCCCAAAACAACAACAAACGAAACAACTCCCTCTCCAACAATGACTCTGCCACTAAGCATGTTAAACTAGCACTACAAGAGGATGATCAAAACGCTGCGTTTAAACCCGAACCAGATACAATTTCAGCACAGAAACAACAGCAGAATGCGAAACCTTCTTCTGAATCGCAACCGCCACCGCCACCGCCAGCTAAACAAGATTATATTCACGTTAGAGCAAGAAGAGGCCAAGCCACCGATAGTCACAGTCTCGCTGAAAGAGCGAGAAGAGAAAAGATTAGTGAGAGAATGAAAATTCTACAAGATTTAGTTCCAGGATGTAACAAGGTAATTGGTAAAGCACTTGTGCTTGATGAGATAATCAATTATATTCAATCGCTACAACATCAAGTTGAGTTTCTTTCAATGAAGCTTGAAGCAGTTAATTCAAGATTGAATATGCACCCTTCTATTGATTGTTTCCCTTTAAAAGATGTTGGTGCTCAACCATTTGACCTTTCTGGAATAGTATTTGGATCGCAAGCAGGAAGGGGCTATGCTCAGGGATCACAGCCAGGATGGCTACATATGCAGATAGCAGGTAGTTTAGATAAAACATCGTAG 681 0.4097 MEHPLINDCTFSSANPSLSEIWPHFSSQNNNKRNNSLSNNDSATKHVKLALQEDDQNAAFKPEPDTISAQKQQQNAKPSSESQPPPPPPAKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSRLNMHPSIDCFPLKDVGAQPFDLSGIVFGSQAGRGYAQGSQPGWLHMQIAGSLDKTS 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02057 226 MobiDBLite consensus disorder prediction 22 93 - -
Vivi1g02057 226 CDD bHLH_AtBPE_like 93 178 - -
Vivi1g02057 226 MobiDBLite consensus disorder prediction 22 46 - -
Vivi1g02057 226 FunFam Basic helix-loop-helix transcription factor 100 172 - -
Vivi1g02057 226 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 32 197 IPR024097 GO:0006355
Vivi1g02057 226 SMART finulus 109 159 IPR011598 GO:0046983
Vivi1g02057 226 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 103 153 IPR011598 GO:0046983
Vivi1g02057 226 Coils Coil 150 170 - -
Vivi1g02057 226 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 101 173 IPR036638 GO:0046983
Vivi1g02057 226 Pfam Helix-loop-helix DNA-binding domain 107 154 IPR011598 GO:0046983
Vivi1g02057 226 Gene3D - 100 177 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02057 Vivi-Chr1 43449334 43451226 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02057 41 226 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 53.476 8.18e-61 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi1g02057 HLH 1.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02057 - - vvo:131605054 438.728