Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02045 ATGGGAGGCGGAGATCTTTCTTTGTCGGACATGGAGGAAGAGGAGGCGGAGGAGGAGGAGAACGGTGTCAAGGTCAACGGTTCACCTGACATTCTTTCGAAGTTTCGAATTCCTGATGCTCCTATACTTTTGTTCGTTTGTTTTCATAAAGCGCTGCGTTCTGAACTCGATCAGCTTCGTGTGTTCGCTGAAACGGCGTCGTTGGAAGATGATCAGAATCGTTGCCGAGAAATAGTTGTTAAGCTTCAACAGAGGTTTCAGTTTGTTAGGTTAGCTCTTAAGTATCACTGTGCTGCAGAAGATGAGATTATCTTCCATGCACTGGATGCGCATGTAAAAAATGTTGTATGTACATATTCCCTTGAACATAACAGCACCGATGGGCTGTTTGTTTCTATTTTAGACTTCTTGGATGAGCTGATGGGCTCTAGTGAGAATATTTCCAAGCTGTTCCGAGAGCTTGTGTACTGCATCGATATCTTGCAAACCTCCATCTACCAACACATGTTGAAAGAAGAAGAGCAGGTTTTTCCTCTGTTGATCCAAAATTTGTCTACTAAAGAACAAGCCTCGCTTTTGTGGCAATTCATATGTAGTGTTCCTATAATGCTGCTGGAGGAAGTTTTGCCATGGATGGTATCCTTCCTTTCAGCAGATAAACAAGCTGAAGTTACTCAGTGTTTTAATGAAATTGCACCAATGGAAAGAGCACTGCAAGAGGCTTTGGTTTCTTGGCTTGGAAGCAACAAACAAACCTTCTCTCGGACATATTTTCAGAGTGAGGAGCTTCAAGGTTCTCATGGAACCCGACATATAGAAAAATCTTTTGGGCAGAGTTCTTGCAATACGAACTACGAAGATGTTTCAAGTCAGATGAAAGTAAATGACAAAGAAACAGAAGATGGGGTCGACCAGGTTAAGGTTCTCCATCTTTGGCATAATGCAATAAGGAAAGATTTGAAAGAAATTCAGCAAGAGCTTTATCTAATAAGAAATTCTGGCTGTTCTCAAAATTTAGACTCAATACTTATCCAGCTAAAATTCTTGGCCGATGTCCTCATCTTCTACAGCAATGCTCTGAAAAAATTCTTTCATCCTATACTGAACAAACTGGCCCATGGCCGATTTTCCAAGTCTACTGAATATTTACTCGGAGAAATTCACATTGAGGATATACAACAGTTGCTACTTTATAACTCAGAAAGCGAAATGCCTTTGACCAAATTTGTAGAGAAGCTTTGCGGAAAACTTGAATTATTTATATCAGCTGTCAACAAACAATTTTCTTTTCAAGAAATTGAGGTGTTTCCTATCTTTAGAAAGAACTGCAGAAATGGAATGCAAGTGAGACTTCTAAGCTTGAGCATGCATATGATGCCACTTGGGTTACTAAAATGTGTTATAACTTGGTTCTCAGTTCACTTGTCTGAAAAGGAATCCAGGTCCATTCTCTATTGCATAAAGGAGGGAAATGATTCTGTCAGTAAAGCTTTTGCTCCATTGTTACATGAATGGTTCCGCACTGGTTATTCAGGTAAAACCTCAATTGAGAAGTTTCGACAGGATTTGCAGTATATGTTCAAAAGAAGACACTCTTTTTCATCTGAGAAAATGAAGGAAACTAGTGGGTTTTCATTCTTAAGTTCTGACAAGCAGCCACATAAAAATTGTGGCAAGAATTGTCTGTCCCATTCATCATCTTCTGTATCCAAAAATGTGAATAAGTATGAGACACCATACTCCACAGGAATTAATTTGCACATATTTTTCCCTGACACTGCTATGAAGTTAAATCAGCATCCAAGGTTTCATGCAGTAAATTCATCTTCTATTTCCTTTCTTAATGATCCAAAGCCAATTGACCTGATATTTTTCTTTCACAAGGCTATTAAGAAAGATTTGGATTACCTAGTTCTTGGCTCAGCTCAGTTAGAGGGACATGATGAATTTATAGATTTCCAAAAACGGTTCCATCTCATATGTTTTCTTCATCAAATCCATAGTGATGCAGAGGATGAGATAGTTTTTCCTGCCTTGGAGGCAATAGGTCAGCTCAAAAACATTAGCCTTGCCTACACCTTTGATCATAAACATGAAGTTGAGCACTTTGGTAAAATATCTCGCATTCTTGAAAGGATGTCTGAATTACATCCTTCGGTCTCTACTACTGATTCAAAGATAAGGGACAAGAGAAGGCTAAGGCGTGATCATTTAATCAAGAAGCTGCAGGAAATGTGCAAATCGATGCATAAGTTACTTTCTGATCATATTAACCGTGAGGAAATAGAACTTTGGCCTATAATTAGAGAATTCTTCTCCAACCGAGAGCAAGGGAAGATCATAGGATGCATGCTTGGAAGAATAAGTGCAGAAATATTACAAGATATGATACCTTGGCTGATGGCATCTTTAACACAGGAAGAGCAGCATATTTTAATGTTCTTATGGTCCATGGTTACTAAGAATACAATGTTTGACGAGTGGTTAAGTGAATGGTGGAATGGGTACAGTTTAGCTAAGGCAGCAGATGGATCAAATGATGCCCCTTTACAGAATGTTGAACCACTAGAAATTATATCCAAATATTTGTCTGAAGAAGTTCTTAATGAATTACAAGAAGAATCATCGGCCAATGAAAGCATAAATTTTTGGCAGAAGGATCTTATTGGCAATAATTCTGAGCTCTCCAACTCCAATGTTGATGACAATGTTAAGATTCATAATACAGCACAAAATTTTAGTCAATGTTCAAAATGCACAAATCAATTTCATGATATTAAGAAACATAAATGCAATGAAGTAAAACCAGTGGGCATTTTGACAAGTCAGTCTTTTCAACATTTTGATTTTAACAAGTCTGGGCATTATGACCGACTTCTGAAATTGAGTCAAGATGATCTGGAGAGGGTAATAAGAAGGGTATCTCGTGACTCTTGCCTAGATCCTCAGAAAAAGTCGTACGTAATACAGAGCCTACTTACGAGCCGTTGGATTATTAATCAGAAGATTTCTTCTATGGAAGTCAATATCAAAAGTGATGGGCTGGAATTCCCTGGGAAACATCCATCTTACAAGGACCCTCTCAAACAAGTCTATGGCTGCAAACACTACAAGAGAAACTGTAAGCTTTTTGCTCCCTGTTGTAATGAACTCCATGCTTGCATACATTGCCATGATGAGGTATCGGATCATTTAATTGACAGAAAATCTATTACAATGATGATGTGTATGAAGTGCTTGGTGATTCAACCAATCAATGCCACATGTTCATCAGTTTCTTGTGGTAATTTATCCATGGCAAAATATTACTGCAAGATCTGCAAATTATTTGAAGATGAAAGGAATATTTACCACTGTCCTTTTTGTAACTTATGCCGACTTGGAAAGGGTTTGGGTGTTGACTTTTTTCATTGCATGAATTGCAATGCTTGTATGTCCCGTTCTCTTATGATACATACATGCAGAGAGAAATCTTTAGAGGAAAACTGTCCGATTTGTCATGAATATATTTTCACATCCTGCTCTCCAGTAAAAGCCCTCTCATGTGGTCATGTGATGCACTCAGCATGTTTTCAGGAATATACTTGCTTTAACTATACCTGCCCAATATGTAGCAAGTCACTTGGAGACATGCAGGTTTATTTTAGGATGCTAGATGCACTGTTGGCTGAGGAGAAAATGCCTGACGAGTTTTCCGGTCAAATTCAGGTTATTTTATGTAATGACTGTGAAAAGAAAGGAGCAGCTCCCTTCCACTGGCTTTACCATAAATGCATTTCTTGTGGTTCATACAACACTAGAGTTTTATGA 3810 0.3835 MGGGDLSLSDMEEEEAEEEENGVKVNGSPDILSKFRIPDAPILLFVCFHKALRSELDQLRVFAETASLEDDQNRCREIVVKLQQRFQFVRLALKYHCAAEDEIIFHALDAHVKNVVCTYSLEHNSTDGLFVSILDFLDELMGSSENISKLFRELVYCIDILQTSIYQHMLKEEEQVFPLLIQNLSTKEQASLLWQFICSVPIMLLEEVLPWMVSFLSADKQAEVTQCFNEIAPMERALQEALVSWLGSNKQTFSRTYFQSEELQGSHGTRHIEKSFGQSSCNTNYEDVSSQMKVNDKETEDGVDQVKVLHLWHNAIRKDLKEIQQELYLIRNSGCSQNLDSILIQLKFLADVLIFYSNALKKFFHPILNKLAHGRFSKSTEYLLGEIHIEDIQQLLLYNSESEMPLTKFVEKLCGKLELFISAVNKQFSFQEIEVFPIFRKNCRNGMQVRLLSLSMHMMPLGLLKCVITWFSVHLSEKESRSILYCIKEGNDSVSKAFAPLLHEWFRTGYSGKTSIEKFRQDLQYMFKRRHSFSSEKMKETSGFSFLSSDKQPHKNCGKNCLSHSSSSVSKNVNKYETPYSTGINLHIFFPDTAMKLNQHPRFHAVNSSSISFLNDPKPIDLIFFFHKAIKKDLDYLVLGSAQLEGHDEFIDFQKRFHLICFLHQIHSDAEDEIVFPALEAIGQLKNISLAYTFDHKHEVEHFGKISRILERMSELHPSVSTTDSKIRDKRRLRRDHLIKKLQEMCKSMHKLLSDHINREEIELWPIIREFFSNREQGKIIGCMLGRISAEILQDMIPWLMASLTQEEQHILMFLWSMVTKNTMFDEWLSEWWNGYSLAKAADGSNDAPLQNVEPLEIISKYLSEEVLNELQEESSANESINFWQKDLIGNNSELSNSNVDDNVKIHNTAQNFSQCSKCTNQFHDIKKHKCNEVKPVGILTSQSFQHFDFNKSGHYDRLLKLSQDDLERVIRRVSRDSCLDPQKKSYVIQSLLTSRWIINQKISSMEVNIKSDGLEFPGKHPSYKDPLKQVYGCKHYKRNCKLFAPCCNELHACIHCHDEVSDHLIDRKSITMMMCMKCLVIQPINATCSSVSCGNLSMAKYYCKICKLFEDERNIYHCPFCNLCRLGKGLGVDFFHCMNCNACMSRSLMIHTCREKSLEENCPICHEYIFTSCSPVKALSCGHVMHSACFQEYTCFNYTCPICSKSLGDMQVYFRMLDALLAEEKMPDEFSGQIQVILCNDCEKKGAAPFHWLYHKCISCGSYNTRVL 1269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02045 1269 ProSiteProfiles Zinc finger CTCHY-type profile. 1099 1162 IPR017921 -
Vivi1g02045 1269 SUPERFAMILY CHY zinc finger-like 1025 1091 IPR037274 GO:0008270
Vivi1g02045 1269 CDD Hr-like 621 766 - -
Vivi1g02045 1269 Gene3D nmb1532 protein domain like 40 198 - -
Vivi1g02045 1269 Gene3D nmb1532 protein domain like 615 787 - -
Vivi1g02045 1269 SUPERFAMILY Zinc hairpin stack 1100 1154 IPR037275 -
Vivi1g02045 1269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1156 1207 IPR013083 -
Vivi1g02045 1269 Pfam CHY zinc finger 1034 1109 IPR008913 GO:0008270
Vivi1g02045 1269 Pfam Zinc-ribbon 1210 1267 IPR039512 -
Vivi1g02045 1269 MobiDBLite consensus disorder prediction 1 24 - -
Vivi1g02045 1269 CDD Hr-like 48 178 - -
Vivi1g02045 1269 CDD RING-H2_Pirh2-like 1162 1205 - -
Vivi1g02045 1269 SUPERFAMILY RING/U-box 1152 1209 - -
Vivi1g02045 1269 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 663 1269 - -
Vivi1g02045 1269 Pfam Hemerythrin HHE cation binding domain 49 180 IPR012312 -
Vivi1g02045 1269 Gene3D - 1234 1269 - -
Vivi1g02045 1269 SMART ring_2 1163 1204 IPR001841 -
Vivi1g02045 1269 FunFam Zinc finger protein-related isoform 1 1158 1207 - -
Vivi1g02045 1269 ProSiteProfiles Zinc finger CHY-type profile. 1027 1096 IPR008913 GO:0008270
Vivi1g02045 1269 ProSiteProfiles Zinc finger RING-type profile. 1163 1205 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02045 Vivi-Chr1 43044815 43053724 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02045 612 851 C2H2 Transcription Factor Family AT3G18290 24.390 1.24e-14 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02045 K16276 - gmx:100802706 1962.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02045 1 43044815 43053724 Vivi1g02045 1 43044815 43053724 ECH