Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02044 ATGGGAGGCGGAGATCTTTCTTTGTCGGACATGGAGGAAGAGGAGGCGGAGGAGGAGGAGAACGGTGTCAAGGTCAACGGTTCACCTGACATTCTTTCGAAGTTTCGAATTCCTGATGCTCCTATACTTTTGTTCGTTTGTTTTCATAAAGCGCTGCGTTCTGAACTCGATCAGCTTCGTGTGTTCGCTGAAACGGCGTCGTTGGAAGATGATCAGAATCGTTGCCGAGAAATAGTTGTTAAGCTTCAACAGAGGTTTCAGTTTGTTAGGTTAGCTCTTAAGTATCACTGTGCTGCAGAAGATGAGATTATCTTCCATGCACTGGATGCGCATGTAAAAAATGTTGTATGTACATATTCCCTTGAACATAACAGCACCGATGGGCTGTTTGTTTCTATTTTAGACTTCTTGGATGAGCTGATGGGCTCTAGTGAGAATATTTCCAAGCTGTTCCGAGAGCTTGTGTACTGCATCGATATCTTGCAAACCTCCATCTACCAACACATGTTGAAAGAAGAAGAGCAGGTTTTTCCTCTGTTGATCCAAAATTTGTCTACTAAAGAACAAGCCTCGCTTTTGTGGCAATTCATATGTAGTGTTCCTATAATGCTGCTGGAGGAAGTTTTGCCATGGATGGTATCCTTCCTTTCAGCAGATAAACAAGCTGAAGTTACTCAGTGTTTTAATGAAATTGCACCAATGGAAAGAGCACTGCAAGAGGCTTTGGTTTCTTGGCTTGGAAGCAACAAACAAACCTTCTCTCGGACATATTTTCAGAGTGAGGAGCTTCAAGGTTCTCATGGAACCCGACATATAGAAAAATCTTTTGGGCAGAGTTCTTGCAATACGAACTACGAAGATGTTTCAAGTCAGATGAAAGTAAATGACAAAGAAACAGAAGATGGGGTCGACCAGGTTAAGGTTCTCCATCTTTGGCATAATGCAATAAGGAAAGATTTGAAAGAAATTCAGCAAGAGCTTTATCTAATAAGAAATTCTGGCTGTTCTCAAAATTTAGACTCAATACTTATCCAGCTAAAATTCTTGGCCGATGTCCTCATCTTCTACAGCAATGCTCTGAAAAAATTCTTTCATCCTATACTGAACAAACTGGCCCATGGCCGATTTTCCAAGTCTACTGAATATTTACTCGGAGAAATTCACATTGAGGATATACAACAGTTGCTACTTTATAACTCAGAAAGCGAAATGCCTTTGACCAAATTTGTAGAGAAGCTTTGCGGAAAACTTGAATTATTTATATCAGCTGTCAACAAACAATTTTCTTTTCAAGAAATTGAGGTGTTTCCTATCTTTAGAAAGAACTGCAGAAATGGAATGCAAGTGAGACTTCTAAGCTTGAGCATGCATATGATGCCACTTGGGTTACTAAAATGTGTTATAACTTGGTTCTCAGTTCACTTGTCTGAAAAGGAATCCAGGTCCATTCTCTATTGCATAAAGGAGGGAAATGATTCTGTCAGTAAAGCTTTTGCTCCATTGTTACATGAATGGTTCCGCACTGGTTATTCAGGTAAAACCTCAATTGAGAAGTTTCGACAGGATTTGCAGTATATGTTCAAAAGAAGACACTCTTTTTCATCTGAGAAAATGAAGGAAACTAGTGGGTTTTCATTCTTAAGTTCTGACAAGCAGCCACATAAAAATTGTGGCAAGAATTGTCTGTCCCATTCATCATCTTCTGTATCCAAAAATGTGAATAAGTATGAGACACCATACTCCACAGGAATTAATTTGCACATATTTTTCCCTGACACTGCTATGAAGTTAAATCAGCATCCAAGGTTTCATGCAGTAAATTCATCTTCTATTTCCTTTCTTAATGATCCAAAGCCAATTGACCTGATATTTTTCTTTCACAAGGCTATTAAGAAAGATTTGGATTACCTAGTTCTTGGCTCAGCTCAGTTAGAGGGACATGATGAATTTATAGATTTCCAAAAACGGTTCCATCTCATATGTTTTCTTCATCAAATCCATAGTGATGCAGAGGATGAGATAGTTTTTCCTGCCTTGGAGGCAATAGGTCAGCTCAAAAACATTAGCCTTGCCTACACCTTTGATCATAAACATGAAGTTGAGCACTTTGGTAAAATATCTCGCATTCTTGAAAGGATGTCTGAATTACATCCTTCGGTCTCTACTACTGATTCAAAGATAAGGGACAAGAGAAGGCTAAGGCGTGATCATTTAATCAAGAAGCTGCAGGAAATGTGCAAATCGATGCATAAGTTACTTTCTGATCATATTAACCGTGAGGAAATAGAACTTTGGCCTATAATTAGAGAATTCTTCTCCAACCGAGAGCAAGGGAAGATCATAGGATGCATGCTTGGAAGAATAAGTGCAGAAATATTACAAGATATGATACCTTGGCTGATGGCATCTTTAACACAGGAAGAGCAGCATATTTTAATGTTCTTATGGTCCATGGTTACTAAGAATACAATGTTTGACGAGTGGTTAAGTGAATGGTGGAATGGGTACAGTTTAGCTAAGGCAGCAGATGGATCAAATGATGCCCCTTTACAGAATGTTGAACCACTAGAAATTATATCCAAATATTTGTCTGAAGAAGTTCTTAATGAATTACAAGAAGAATCATCGGCCAATGAAAGCATAAATTTTTGGCAGAAGGATCTTATTGGCAATAATTCTGAGCTCTCCAACTCCAATGTTGATGACAATGTTAAGATTCATAATACAGCACAAAATTTTAGTCAATGTTCAAAATGCACAAATCAATTTCATGATATTAAGAAACATAAATGCAATGAAGTAAAACCAGTGGGCATTTTGACAAGTCAGTCTTTTCAACATTTTGATTTTAACAAGTCTGGGCATTATGACCGACTTCTGAAATTGAGTCAAGATGATCTGGAGAGGGTAATAAGAAGGGTATCTCGTGACTCTTGCCTAGATCCTCAGAAAAAGTCGTACGTAATACAGAGCCTACTTACGAGCCGTTGGATTATTAATCAGAAGATTTCTTCTATGGAAGTCAATATCAAAAGTGATGGGCTGGAATTCCCTGGGAAACATCCATCTTACAAGGACCCTCTCAAACAAGTCTATGGCTGCAAACACTACAAGAGAAACTGTAAGCTTTTTGCTCCCTGTTGTAATGAACTCCATGCTTGCATACATTGCCATGATGAGGTATCGGATCATTTAATTGACAGAAAATCTATTACAATGATGATGTGTATGAAGTGCTTGGTGATTCAACCAATCAATGCCACATGTTCATCAGTTTCTTGTGGTAATTTATCCATGGCAAAATATTACTGCAAGATCTGCAAATTATTTGAAGATGAAAGCAGGAATATTTACCACTGTCCTTTTTGTAACTTATGCCGACTTGGAAAGGGTTTGGGTGTTGACTTTTTTCATTGCATGAATTGCAATGCTTGTATGTCCCGTTCTCTTATGATACATACATGCAGAGAGAAATCTTTAGAGGAAAACTGTCCGATTTGTCATGAATATATTTTCACATCCTGCTCTCCAGTAAAAGCCCTCTCATGTGGTCATGTGATGCACTCAGCATGTTTTCAGGAATATACTTGCTTTAACTATACCTGCCCAATATGTAGCAAGTCACTTGGAGACATGCAGGTTTATTTTAGGATGCTAGATGCACTGTTGGCTGAGGAGAAAATGCCTGACGAGTTTTCCGGTCAAATTCAGGTTATTTTATGTAATGACTGTGAAAAGAAAGGAGCAGCTCCCTTCCACTGGCTTTACCATAAATGCATTTCTTGTGGTTCATACAACACTAGAGTTTTATGA 3813 0.3837 MGGGDLSLSDMEEEEAEEEENGVKVNGSPDILSKFRIPDAPILLFVCFHKALRSELDQLRVFAETASLEDDQNRCREIVVKLQQRFQFVRLALKYHCAAEDEIIFHALDAHVKNVVCTYSLEHNSTDGLFVSILDFLDELMGSSENISKLFRELVYCIDILQTSIYQHMLKEEEQVFPLLIQNLSTKEQASLLWQFICSVPIMLLEEVLPWMVSFLSADKQAEVTQCFNEIAPMERALQEALVSWLGSNKQTFSRTYFQSEELQGSHGTRHIEKSFGQSSCNTNYEDVSSQMKVNDKETEDGVDQVKVLHLWHNAIRKDLKEIQQELYLIRNSGCSQNLDSILIQLKFLADVLIFYSNALKKFFHPILNKLAHGRFSKSTEYLLGEIHIEDIQQLLLYNSESEMPLTKFVEKLCGKLELFISAVNKQFSFQEIEVFPIFRKNCRNGMQVRLLSLSMHMMPLGLLKCVITWFSVHLSEKESRSILYCIKEGNDSVSKAFAPLLHEWFRTGYSGKTSIEKFRQDLQYMFKRRHSFSSEKMKETSGFSFLSSDKQPHKNCGKNCLSHSSSSVSKNVNKYETPYSTGINLHIFFPDTAMKLNQHPRFHAVNSSSISFLNDPKPIDLIFFFHKAIKKDLDYLVLGSAQLEGHDEFIDFQKRFHLICFLHQIHSDAEDEIVFPALEAIGQLKNISLAYTFDHKHEVEHFGKISRILERMSELHPSVSTTDSKIRDKRRLRRDHLIKKLQEMCKSMHKLLSDHINREEIELWPIIREFFSNREQGKIIGCMLGRISAEILQDMIPWLMASLTQEEQHILMFLWSMVTKNTMFDEWLSEWWNGYSLAKAADGSNDAPLQNVEPLEIISKYLSEEVLNELQEESSANESINFWQKDLIGNNSELSNSNVDDNVKIHNTAQNFSQCSKCTNQFHDIKKHKCNEVKPVGILTSQSFQHFDFNKSGHYDRLLKLSQDDLERVIRRVSRDSCLDPQKKSYVIQSLLTSRWIINQKISSMEVNIKSDGLEFPGKHPSYKDPLKQVYGCKHYKRNCKLFAPCCNELHACIHCHDEVSDHLIDRKSITMMMCMKCLVIQPINATCSSVSCGNLSMAKYYCKICKLFEDESRNIYHCPFCNLCRLGKGLGVDFFHCMNCNACMSRSLMIHTCREKSLEENCPICHEYIFTSCSPVKALSCGHVMHSACFQEYTCFNYTCPICSKSLGDMQVYFRMLDALLAEEKMPDEFSGQIQVILCNDCEKKGAAPFHWLYHKCISCGSYNTRVL 1270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02044 1270 ProSiteProfiles Zinc finger RING-type profile. 1164 1206 IPR001841 -
Vivi1g02044 1270 SUPERFAMILY Zinc hairpin stack 1100 1155 IPR037275 -
Vivi1g02044 1270 CDD Hr-like 621 766 - -
Vivi1g02044 1270 Pfam Zinc-ribbon 1211 1268 IPR039512 -
Vivi1g02044 1270 Gene3D nmb1532 protein domain like 40 198 - -
Vivi1g02044 1270 Gene3D nmb1532 protein domain like 615 787 - -
Vivi1g02044 1270 FunFam Zinc finger protein-related isoform 1 1159 1208 - -
Vivi1g02044 1270 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 663 1270 - -
Vivi1g02044 1270 Pfam CHY zinc finger 1034 1109 IPR008913 GO:0008270
Vivi1g02044 1270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1157 1208 IPR013083 -
Vivi1g02044 1270 SMART ring_2 1164 1205 IPR001841 -
Vivi1g02044 1270 MobiDBLite consensus disorder prediction 1 24 - -
Vivi1g02044 1270 SUPERFAMILY RING/U-box 1153 1210 - -
Vivi1g02044 1270 CDD Hr-like 48 178 - -
Vivi1g02044 1270 Gene3D - 1235 1270 - -
Vivi1g02044 1270 SUPERFAMILY CHY zinc finger-like 1025 1091 IPR037274 GO:0008270
Vivi1g02044 1270 Pfam Hemerythrin HHE cation binding domain 49 180 IPR012312 -
Vivi1g02044 1270 ProSiteProfiles Zinc finger CTCHY-type profile. 1099 1163 IPR017921 -
Vivi1g02044 1270 ProSiteProfiles Zinc finger CHY-type profile. 1027 1096 IPR008913 GO:0008270
Vivi1g02044 1270 CDD RING-H2_Pirh2-like 1163 1206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02044 Vivi-Chr1 43044815 43053727 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02044 612 851 C2H2 Transcription Factor Family AT3G18290 24.390 1.20e-14 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02044 K16276 - gmx:100802706 1957.96