Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02043 ATGACCCTTAAGGGTGGGACAACACAGGCTTGTGCAGCATGCAAATTCCAGAGAAGAAAGTGCACACCTGAGTGCGTTTTAGCTCCTTATTTCCCTGCAGATCAACCTAAGATATTCCTTAATGTTCACAAACTATTTGGAGTTAGCAACATTGTCAAGATACTTAAAATCTTGGAGCCTACTCAGAAGAAACCGGCTATGGATTCGATTATCACGCAAGCTAATTATAGAGATAAGTATCCGGTGCATGGATGTTGGGAGGAAATTTGCAGGCTACAATATCAAATATGGATGATGGAAGAAGAGCTTCATGCTGTTTATCAACAACTTGAAATGTGTCGACAACAACAACAGTTGCCTCATGATGATGTGACTTCGCAGTTAGAATTGGGAATGGGACCACGTTCGTCCAATGCGCTCGCGCTGTTTAATAACACTCCGCAGCCACAGAATTATAACACAGTGGCTGCTCCTTTGTCTGTGTCTCAACAGCATTCTTACTCCAACAGCAATAGTATGGATTATAATAACTCTCCTCTCTATATGGATTCGAAGGATAATGTTACGAATCCGAATTTGTGGCTTCAGTGCCCTTACACTAATAGCAATGGCAATTCAATAACAATGCAACCTCATCAGTTGATTGCCTCAGAGTCACAACAACCACTGTCATCTGTTCAACAAGGAGTTGTTGAAGATAATTATGATGAAATGCATTCGTTTTTTGATACGGTTGATGATAGGCAATCATACATTTATTCTAAGGAGGCTTATGAATCAAGTTCAGAAGAATCATTGAAAGATACAAGAAAGTGCACTGAGCATGTTTCTGAGAATGAACTGAAGAGTGCTGCTGCTTGTTTCAGCCTTACCAGTGTCAACTGA 885 0.4056 MTLKGGTTQACAACKFQRRKCTPECVLAPYFPADQPKIFLNVHKLFGVSNIVKILKILEPTQKKPAMDSIITQANYRDKYPVHGCWEEICRLQYQIWMMEEELHAVYQQLEMCRQQQQLPHDDVTSQLELGMGPRSSNALALFNNTPQPQNYNTVAAPLSVSQQHSYSNSNSMDYNNSPLYMDSKDNVTNPNLWLQCPYTNSNGNSITMQPHQLIASESQQPLSSVQQGVVEDNYDEMHSFFDTVDDRQSYIYSKEAYESSSEESLKDTRKCTEHVSENELKSAAACFSLTSVN 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02043 294 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Vivi1g02043 294 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 171 - -
Vivi1g02043 294 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02043 Vivi-Chr1 43042731 43044617 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02043 1 257 AS2 family AT3G47870 41.100 5.90e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi1g02043 LOB 1.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02043 - - lang:109357116 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02043 1 43042731 43044617 Vivi1g02043 1 43042731 43044617 ECH