Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02042 ATGGGACACAAAAAGCGAAACTCCGCGCCTCGTTCCAAGAATTCGCCGGCGGCTTCTCCGGTGTCTCAATCTCCCATCGGCGGAGCCGCCGCTAAAGGTTCCACTTCACCCGACTCCGATGCCACCAACGTTTTCGATCAGAATCTTTCTAACCCTAGCAAGAACGAATTGGTTCTTTTTCAATCTGAGGGTTCTGATTTCTCTGCGATTAAGGTAGAATGTGAGCGAGCCCTAACCACGTTTCGTCGTGGGAATCACAATAGGGCGATGAAGCTCATGAAGGAGTTGTGCTTGAAGGAGGAGGGTTCGCCTTACTCCGCTTTCGTTTATCGAATTCATGGATTTATATGTTTCAAGGTGGCTTCGATTATTACTGATTGTAGCGCTAAGCAGCGGCATTTGAAGCATGCTGTTGAATCGGCTAGGAGAGCTGTTGAGCTTTCGCCGAATTCGATTGAGTATGCACATTTCCATGCCACTGTGATATTGGAAGCAGCGACTGAGGGGAAGGATTATGAGGATGTGGTGCACGAGTGTGAGAGAGGGCTTGCTATTGAAAACCCAAATGATCCTGCTAAGGAGACGTTGCAGGATGAGAGCGAGCAGAAGGTGTCTAGTTTGGAAGACCGTATATTACATGTGCAGGCTGAGTTGAGGCAGCTGATTCAGAAGTCTAACATAGCTTCGCTGTCGTCTTGGATGAAAAATCTGGGTAATGGGGAAGACAGGTTTCGGTTGATTCCTATAAGGAGGGCTACGGAGGACCCTATGGAGGTTAGGTTAGTTCAGGCTAGAAGGCCAAATGAGATTAAGAAGGTTACCAAGACGCCCGAGGAAAGAAGAAAAGAGATTGAAGTTAGGGTAGCTGCTGCAAGACTGTTGCAGCAGAAGTCAGAGGCACCGCAGTCTCCGAATGAAGGAGAAAGGGATGACAGGGCATTGGATTTGTCTTCAGGGTCTAGTCAGAGGACAGGTGAGAGGCGTAGGCATATGAGAAAAAATGGCTCTACAGCCGAAAGGAGAAAGTGGGTGCTATCTTATTGGGATTCAGTGAGTATGGATGTGAAGAAGGACTGCCTTAGGATTAAAATATCTGATATCATCTCCCACTTTGGCTCTTCAAAGGAGACTCTGCCAAAAGATGTTTTATCAGAAGCTCTGTTTTATGCCGAAGCCAATAAAACATGGAAATTTTGGGTTTGTGGCATTTGTGCTGAGATCTTTTCCAATCCGGAAGGTCATAGGCAGCATGTTATGCAGGCACACCTTCAGACTCTCTCTCCAAAAATGCAGAGAGTTTTGCCTCAACATGTTGACAATGAATGGCTTGAGATGATTCTTAATTTTTCCTGGAAGCCTTTGGATGTCTCAGCTGCAGTTAAAATGATTGACTATAAAGCAAATCTCAAAAGTTCATCTATTCCAGAGGATTATCTTGCTCAGGGCTACAATGACTGTTTTAAAGATTCAACCATCTCATACCATGGAAAGGAAAGTTTAGGATACAGTTTTGGTAATTGTACAACAGAAAGAAGCAAGTATTATAAAATTGCTGATAGTAATGCCAGAGAAGGCATTGCAGACCAACAGTTTATGGCAAATCCTGTTACTGATTGTTGGCCAGTATCTGATGACAAGGAGCGTGCAAAACTTCTAGAGAAAATCCATGGAGTATTTGAAATACTTATTAGACACAAATGTATTGCTGCTAGTCATCTTCACAAGGTCATACAATTTAGTATGGGTGAGATCCAAGGTCTTGCTGCTGGTTCTGAACTTCTAAAACATGATGTAGACCAAACACCAATGTGCATATGCTTTCTGGGAGCTTCACAACTTAAGAAAATTCTCCAATTTCTGCAGGAAATGTCTCATGCTTGTGGGTTGGGTAGATATGCTGATAAAAGTAGTAGTCCCAAGAATGATTTGCATGATATCATCCAGAGTCCCGAGATCAGAGAGAAAATTGTTCTCAATGGAGATGCATCATGCCTTCTCCTGGATGAGTCTCTACTTACACAATTCACTCCTGGTACAGCCCAGGAGTCTGTTTTTGAGGACATGGTCACCCCAAGTTCTCCTGATGGAATTTCAGACAGTAGTGGTGCTTTTCTGTCCTGGTTATATTCAAGTCGGTCTATTGGGGATCAATTGTCTACATGGATTCGGACCAAAGAAGATAAAATATGCCAAGGACAAGAAATGGTCCGGACACTTGACAAGGAGTTTTATCAATTACATAGTTTGTGTCAAAAGAAGTGTGACCGTTTAGCCTATGAGGAAGCACTACAGACAATTGAGGATCTTTGTCTTGAAGAAGGTAAGAAGAGGGGGAATGTGGGTGAATTTGTGCAGCGAAGCTATGAGTCTGTCTTAAAACGGCGGAGGGAAGAGATTGCTGAGAGTGAAAATGAAATGGCGTATACTGGAAATAGGTTTGAGATGGAATGTATATCAAATGTTTTGCAAGAAGCAGAAGCGATGAATGTTAATAATCAATATTGCTGTGATGAAACTTATCCTGGCGCGACTTCTCAGATATGTGACTTAGAATCCGGTGAAAATGATGAATGGAGAATGAAGGACTGTTTGCATCAAATGGATGGTTGTGTAGAAATTGCTATTCAGAAACTTAAAGAGCACGCATCTATAGAGATTAGCAAAGTTGACGCTGAAATAATAAGATGTGTTTCAGAGGTGCAGCAATTGGAACTCAAGCTTGGACATGTTTCTGCCAATGATTATCGAGCAATACTTGTGCCGCTGGTGAAGGTGTACCTAAAGGCACTTTTGGAAGATTTGGCTGAGAAATATGCTAGGGAGAAATCTGACGCAGCAGGTGAAGCATTTTTGGCTGAACTTGCTCTTGATTCCAAGAAGATTGGCAAAGGGGGAAATGAGAGCACTAGACATGTGGAGAAGACAAAGGATAAGAAGAAAAATAAAGATCACAGAAAAACAAGAGATTTGAAGGCCACAAGTGGTTCTATCCATCCCTCGCTTCAGCCTACTACTCTAGATTGCAGTTCTGATCTAGTATCACCTGATAGTGACTTTCAAGATCATGAGGTTATTTCCATGGATGATGCTGATTTGGAACACCACGAAGAGGAATTTAGACGTAAAATTGAACTTGAAGAGGAGGAAAAAAAGCTTGAAGAAACCTTGGAGCTTCAACGGAGGATTGAAAACGAGGCCAAACAGAAGCACCTTGCTGAGCAACAGAAGAAATTATCAGGTACATGTGTAGAGGAAGTGTCTGACAAACTTCAAGGTTGTCAATTGAAGCCTGTTGTCGACGGCTCAGATGTGCAAGAATATGGAAGACTACCTATGCAGGAACAGTTGGGAAAGGAGAATGGGAGCCCAAACAATCTGGACGTCGTTACCGCAACAAATGGTTCCATGGCGCCAACTAAATATTTGGCTGATTCAGCTCCCCCCAAAATTAGTCTTTTGCATAAACAAGCAGATATACTCAATGGAACTGTTCCAGAGAAGGGTCTACCTTTGCCTGATAGGCGTGCAGCAAAAAAACATAAGCGGAGTAAGAATTCGTCTAAAATGGTTGATGGAAAGTTGGAGTACATTTCATTGGAGGAAAATGAGAATATTGAGGATAAACATACTGACTATCACATGAGAGAGCAGGCTAAGTTTCATAACAGTCAAGATGCCAAACATTTGTTGGAAAACAATGGAGTAAAGGTGATGAAAGAATTGCAAGTAGAAGATGAGGAGGAGGAAAGATTCCAAGCTGATCTTAAAATGGCTGTTCGCCAAAGCCTAGACACATATCAAGCACATGGAAATTTGCCTTTTGTTTCAAGTTTGAGGATGCCACAGAGATCTTCCTCACAGGTAGACCGTTCAGGTCTTGCACCTTTGGAAGATTCAGCTAAAGACGTGAATGGAGCTAGTTTACTTGGTACAGGACTGATGAATGAAGTGGGGGAATATAATTGTTTCCTTAATGTTATTATTCAGTCTTTGTGGCATTTAAGCCGCTTTCGGGTGGAATTTCTTGGCAAACCAGTATCAGAGCATGCTCATGTCGGTAATCCCTGTGTTGTCTGTGCCTTGTATGAAATATTTACCGCTCTAGACCTTGCTTCAAAGGATTCAAGGAGGGAAGCAGTTGCACCTACTTCCCTGCGGATAGCTCTAAGCAACCTATATCCAGAGAGTAACTTCTTCCAGGAGGCTCAGATGAATGATGCTTCCGAGGTACTGGGAGTAATATTTGACTGCCTTCATCAATCATTTACCCGTGGTTCAGATGTTTCTAATGCAGAATCAGTGGAAAGTAACTGCACAGGGTCTTGGGATTGTGCAGCTGATAGTTGTATAGTACATTCGCATTTTGGAATGAACATTTTTGAACAGATGAACTGCTACCATTGTGGTCTTGAGTCCAGACGTTTGAAGTATACTTCTTTCTTTCACAATATAAATGCCAATGCCCTTAGGACAATGAAGGCTATGTTTCCTGAGAGCTCTCTTGACAAGCTTTTGAATCTTGTGGAGAGGAACCATCAACTGGCTTGTGATCTAGAGGCTGAGGGCTGTGGCAAGCTCAACCACATTCATCACTTTCTTTCAGCCCCGCCCCGTGTTTTTATGACAGTTCTAGGTTGGCAAAATACATGTGAGAGTGTTGACGACATAACTGCAACTTTGGCAGCCCTGAGCACCAAGATAGATATCAGTGTCCTTTATCGTGGTTTAAGTCCTAAAAGCACCCATAACTTGGTTTCAGTGGTTTGCTACTATGGCCAGCATTATCATTGCTTTGCTTATAGTCATGACCACGGCCATTGGATTATGTATGATGACCAGACTGTTAAAGTAATTGGTGGATGGGCTGATGTTCTTACTATGTGTGAGAGAGGACATCTCCAGCCTCAGGTTCTCTTCTTTGAAGCTGTAAACTAG 4935 0.4284 MGHKKRNSAPRSKNSPAASPVSQSPIGGAAAKGSTSPDSDATNVFDQNLSNPSKNELVLFQSEGSDFSAIKVECERALTTFRRGNHNRAMKLMKELCLKEEGSPYSAFVYRIHGFICFKVASIITDCSAKQRHLKHAVESARRAVELSPNSIEYAHFHATVILEAATEGKDYEDVVHECERGLAIENPNDPAKETLQDESEQKVSSLEDRILHVQAELRQLIQKSNIASLSSWMKNLGNGEDRFRLIPIRRATEDPMEVRLVQARRPNEIKKVTKTPEERRKEIEVRVAAARLLQQKSEAPQSPNEGERDDRALDLSSGSSQRTGERRRHMRKNGSTAERRKWVLSYWDSVSMDVKKDCLRIKISDIISHFGSSKETLPKDVLSEALFYAEANKTWKFWVCGICAEIFSNPEGHRQHVMQAHLQTLSPKMQRVLPQHVDNEWLEMILNFSWKPLDVSAAVKMIDYKANLKSSSIPEDYLAQGYNDCFKDSTISYHGKESLGYSFGNCTTERSKYYKIADSNAREGIADQQFMANPVTDCWPVSDDKERAKLLEKIHGVFEILIRHKCIAASHLHKVIQFSMGEIQGLAAGSELLKHDVDQTPMCICFLGASQLKKILQFLQEMSHACGLGRYADKSSSPKNDLHDIIQSPEIREKIVLNGDASCLLLDESLLTQFTPGTAQESVFEDMVTPSSPDGISDSSGAFLSWLYSSRSIGDQLSTWIRTKEDKICQGQEMVRTLDKEFYQLHSLCQKKCDRLAYEEALQTIEDLCLEEGKKRGNVGEFVQRSYESVLKRRREEIAESENEMAYTGNRFEMECISNVLQEAEAMNVNNQYCCDETYPGATSQICDLESGENDEWRMKDCLHQMDGCVEIAIQKLKEHASIEISKVDAEIIRCVSEVQQLELKLGHVSANDYRAILVPLVKVYLKALLEDLAEKYAREKSDAAGEAFLAELALDSKKIGKGGNESTRHVEKTKDKKKNKDHRKTRDLKATSGSIHPSLQPTTLDCSSDLVSPDSDFQDHEVISMDDADLEHHEEEFRRKIELEEEEKKLEETLELQRRIENEAKQKHLAEQQKKLSGTCVEEVSDKLQGCQLKPVVDGSDVQEYGRLPMQEQLGKENGSPNNLDVVTATNGSMAPTKYLADSAPPKISLLHKQADILNGTVPEKGLPLPDRRAAKKHKRSKNSSKMVDGKLEYISLEENENIEDKHTDYHMREQAKFHNSQDAKHLLENNGVKVMKELQVEDEEEERFQADLKMAVRQSLDTYQAHGNLPFVSSLRMPQRSSSQVDRSGLAPLEDSAKDVNGASLLGTGLMNEVGEYNCFLNVIIQSLWHLSRFRVEFLGKPVSEHAHVGNPCVVCALYEIFTALDLASKDSRREAVAPTSLRIALSNLYPESNFFQEAQMNDASEVLGVIFDCLHQSFTRGSDVSNAESVESNCTGSWDCAADSCIVHSHFGMNIFEQMNCYHCGLESRRLKYTSFFHNINANALRTMKAMFPESSLDKLLNLVERNHQLACDLEAEGCGKLNHIHHFLSAPPRVFMTVLGWQNTCESVDDITATLAALSTKIDISVLYRGLSPKSTHNLVSVVCYYGQHYHCFAYSHDHGHWIMYDDQTVKVIGGWADVLTMCERGHLQPQVLFFEAVN 1644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02042 1644 Coils Coil 197 224 - -
Vivi1g02042 1644 Pfam Protein of unknown function (DUF629) 345 872 IPR006865 -
Vivi1g02042 1644 MobiDBLite consensus disorder prediction 1 47 - -
Vivi1g02042 1644 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1311 1643 IPR028889 -
Vivi1g02042 1644 MobiDBLite consensus disorder prediction 962 1013 - -
Vivi1g02042 1644 Coils Coil 785 805 - -
Vivi1g02042 1644 ProSitePatterns Zinc finger C2H2 type domain signature. 401 422 IPR013087 -
Vivi1g02042 1644 Coils Coil 1035 1075 - -
Vivi1g02042 1644 Pfam Ubiquitin carboxyl-terminal hydrolase 1312 1620 IPR001394 GO:0004843|GO:0016579
Vivi1g02042 1644 Gene3D Cysteine proteinases 1298 1642 - -
Vivi1g02042 1644 CDD Peptidase_C19 1402 1641 - -
Vivi1g02042 1644 MobiDBLite consensus disorder prediction 1163 1188 - -
Vivi1g02042 1644 Gene3D Tetratricopeptide repeat domain 66 210 IPR011990 GO:0005515
Vivi1g02042 1644 MobiDBLite consensus disorder prediction 293 335 - -
Vivi1g02042 1644 SUPERFAMILY Cysteine proteinases 1311 1641 IPR038765 -
Vivi1g02042 1644 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1643 - -
Vivi1g02042 1644 MobiDBLite consensus disorder prediction 993 1013 - -
Vivi1g02042 1644 Pfam Protein of unknown function (DUF627) 76 187 IPR006866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02042 Vivi-Chr1 43024259 43034406 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02042 66 1641 C2H2 Transcription Factor Family AT3G47890 52.945 0.0 1585