LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g02041	ATGGGACACAAAAAGCGAAACTCCGCGCCTCGTTCCAAGAATTCGCCGGCGGCTTCTCCGGTGTCTCAATCTCCCATCGGCGGAGCCGCCGCTAAAGGTTCCACTTCACCCGACTCCGATGCCACCAACGTTTTCGATCAGAATCTTTCTAACCCTAGCAAGAACGAATTGGTTCTTTTTCAATCTGAGGGTTCTGATTTCTCTGCGATTAAGGTAGAATGTGAGCGAGCCCTAACCACGTTTCGTCGTGGGAATCACAATAGGGCGATGAAGCTCATGAAGGAGTTGTGCTTGAAGGAGGAGGGTTCGCCTTACTCCGCTTTCGTTTATCGAATTCATGGATTTATATGTTTCAAGGTGGCTTCGATTATTACTGATTGTAGCGCTAAGCAGCGGCATTTGAAGCATGCTGTTGAATCGGCTAGGAGAGCTGTTGAGCTTTCGCCGAATTCGATTGAGTATGCACATTTCCATGCCACTGTGATATTGGAAGCAGCGACTGAGGGGAAGGATTATGAGGATGTGGTGCACGAGTGTGAGAGAGGGCTTGCTATTGAAAACCCAAATGATCCTGCTAAGGAGACGTTGCAGGATGAGAGCGAGCAGAAGGTGTCTAGTTTGGAAGACCGTATATTACATGTGCAGGCTGAGTTGAGGCAGCTGATTCAGAAGTCTAACATAGCTTCGCTGTCGTCTTGGATGAAAAATCTGGGTAATGGGGAAGACAGGTTTCGGTTGATTCCTATAAGGAGGGCTACGGAGGACCCTATGGAGGTTAGGTTAGTTCAGGCTAGAAGGCCAAATGAGATTAAGAAGGTTACCAAGACGCCCGAGGAAAGAAGAAAAGAGATTGAAGTTAGGGTAGCTGCTGCAAGACTGTTGCAGCAGAAGTCAGAGGCACCGCAGTCTCCGAATGAAGGAGAAAGGGATGACAGGGCATTGGATTTGTCTTCAGGGTCTAGTCAGAGGACAGGTGAGAGGCGTAGGCATATGAGAAAAAATGGCTCTACAGCCGAAAGGAGAAAGTGGGTGCTATCTTATTGGGATTCAGTGAGTATGGATGTGAAGAAGGACTGCCTTAGGATTAAAATATCTGATATCATCTCCCACTTTGGCTCTTCAAAGGAGACTCTGCCAAAAGATGTTTTATCAGAAGCTCTGTTTTATGCCGAAGCCAATAAAACATGGAAATTTTGGGTTTGTGGCATTTGTGCTGAGATCTTTTCCAATCCGGAAGGTCATAGGCAGCATGTTATGCAGGCACACCTTCAGACTCTCTCTCCAAAAATGCAGAGAGTTTTGCCTCAACATGTTGACAATGAATGGCTTGAGATGATTCTTAATTTTTCCTGGAAGCCTTTGGATGTCTCAGCTGCAGTTAAAATGATTGACTATAAAGCAAATCTCAAAAGTTCATCTATTCCAGAGGATTATCTTGCTCAGGGCTACAATGACTGTTTTAAAGATTCAACCATCTCATACCATGGAAAGGAAAGTTTAGGATACAGTTTTGGTAATTGTACAACAGAAAGAAGCAAGTATTATAAAATTGCTGATAGTAATGCCAGAGAAGGCATTGCAGACCAACAGTTTATGGCAAATCCTGTTACTGATTGTTGGCCAGTATCTGATGACAAGGAGCGTGCAAAACTTCTAGAGAAAATCCATGGAGTATTTGAAATACTTATTAGACACAAATGTATTGCTGCTAGTCATCTTCACAAGGTCATACAATTTAGTATGGGTGAGATCCAAGGTCTTGCTGCTGGTTCTGAACTTCTAAAACATGATGTAGACCAAACACCAATGTGCATATGCTTTCTGGGAGCTTCACAACTTAAGAAAATTCTCCAATTTCTGCAGGAAATGTCTCATGCTTGTGGGTTGGGTAGATATGCTGATAAAAGTAGTAGTCCCAAGAATGATTTGCATGATATCATCCAGAGTCCCGAGATCAGAGAGAAAATTGTTCTCAATGGAGATGCATCATGCCTTCTCCTGGATGAGTCTCTACTTACACAATTCACTCCTGGTACAGCCCAGGAGTCTGTTTTTGAGGACATGGTCACCCCAAGTTCTCCTGATGGAATTTCAGACAGTAGTGGTGCTTTTCTGTCCTGGTTATATTCAAGTCGGTCTATTGGGGATCAATTGTCTACATGGATTCGGACCAAAGAAGATAAAATATGCCAAGGACAAGAAATGGTCCGGACACTTGACAAGGAGTTTTATCAATTACATAGTTTGTGTCAAAAGAAGTGTGACCGTTTAGCCTATGAGGAAGCACTACAGACAATTGAGGATCTTTGTCTTGAAGAAGGTAAGAAGAGGGGGAATGTGGGTGAATTTGTGCAGCGAAGCTATGAGTCTGTCTTAAAACGGCGGAGGGAAGAGATTGCTGAGAGTGAAAATGAAATGGCGTATACTGGAAATAGGTTTGAGATGGAATGTATATCAAATGTTTTGCAAGAAGCAGAAGCGATGAATGTTAATAATCAATATTGCTGTGATGAAACTTATCCTGGCGCGACTTCTCAGATATGTGACTTAGAATCCGGTGAAAATGATGAATGGAGAATGAAGGACTGTTTGCATCAAATGGATGGTTGTGTAGAAATTGCTATTCAGAAACTTAAAGAGCACGCATCTATAGAGATTAGCAAAGTTGACGCTGAAATAATAAGATGTGTTTCAGAGGTGCAGCAATTGGAACTCAAGCTTGGACATGTTTCTGCCAATGATTATCGAGCAATACTTGTGCCGCTGGTGAAGGTGTACCTAAAGGCACTTTTGGAAGATTTGGCTGAGAAATATGCTAGGGAGAAATCTGACGCAGCAGGTGAAGCATTTTTGGCTGAACTTGCTCTTGATTCCAAGAAGATTGGCAAAGGGGGAAATGAGAGCACTAGACATGTGGAGAAGACAAAGGATAAGAAGAAAAATAAAGATCACAGAAAAACAAGAGATTTGAAGGCCACAAGTGGTTCTATCCATCCCTCGCTTCAGCCTACTACTCTAGATTCTGATCTAGTATCACCTGATAGTGACTTTCAAGATCATGAGGTTATTTCCATGGATGATGCTGATTTGGAACACCACGAAGAGGAATTTAGACGTAAAATTGAACTTGAAGAGGAGGAAAAAAAGCTTGAAGAAACCTTGGAGCTTCAACGGAGGATTGAAAACGAGGCCAAACAGAAGCACCTTGCTGAGCAACAGAAGAAATTATCAGGTACATGTGTAGAGGAAGTGTCTGACAAACTTCAAGGTTGTCAATTGAAGCCTGTTGTCGACGGCTCAGATGTGCAAGAATATGGAAGACTACCTATGCAGGAACAGTTGGGAAAGGAGAATGGGAGCCCAAACAATCTGGACGTCGTTACCGCAACAAATGGTTCCATGGCGCCAACTAAATATTTGGCTGATTCAGCTCCCCCCAAAATTAGTCTTTTGCATAAACAAGCAGATATACTCAATGGAACTGTTCCAGAGAAGGGTCTACCTTTGCCTGATAGGCGTGCAGCAAAAAAACATAAGCGGAGTAAGAATTCGTCTAAAATGGTTGATGGAAAGTTGGAGTACATTTCATTGGAGGAAAATGAGAATATTGAGGATAAACATACTGACTATCACATGAGAGAGCAGGCTAAGTTTCATAACAGTCAAGATGCCAAACATTTGTTGGAAAACAATGGAGTAAAGGTGATGAAAGAATTGCAAGTAGAAGATGAGGAGGAGGAAAGATTCCAAGCTGATCTTAAAATGGCTGTTCGCCAAAGCCTAGACACATATCAAGCACATGGAAATTTGCCTTTTGTTTCAAGTTTGAGGATGCCACAGAGATCTTCCTCACAGGTAGACCGTTCAGGTCTTGCACCTTTGGAAGATTCAGCTAAAGACGTGAATGGAGCTAGTTTACTTGGTACAGGACTGATGAATGAAGTGGGGGAATATAATTGTTTCCTTAATGTTATTATTCAGTCTTTGTGGCATTTAAGCCGCTTTCGGGTGGAATTTCTTGGCAAACCAGTATCAGAGCATGCTCATGTCGGTAATCCCTGTGTTGTCTGTGCCTTGTATGAAATATTTACCGCTCTAGACCTTGCTTCAAAGGATTCAAGGAGGGAAGCAGTTGCACCTACTTCCCTGCGGATAGCTCTAAGCAACCTATATCCAGAGAGTAACTTCTTCCAGGAGGCTCAGATGAATGATGCTTCCGAGGTACTGGGAGTAATATTTGACTGCCTTCATCAATCATTTACCCGTGGTTCAGATGTTTCTAATGCAGAATCAGTGGAAAGTAACTGCACAGGGTCTTGGGATTGTGCAGCTGATAGTTGTATAGTACATTCGCATTTTGGAATGAACATTTTTGAACAGATGAACTGCTACCATTGTGGTCTTGAGTCCAGACGTTTGAAGTATACTTCTTTCTTTCACAATATAAATGCCAATGCCCTTAGGACAATGAAGGCTATGTTTCCTGAGAGCTCTCTTGACAAGCTTTTGAATCTTGTGGAGAGGAACCATCAACTGGCTTGTGATCTAGAGGCTGAGGGCTGTGGCAAGCTCAACCACATTCATCACTTTCTTTCAGCCCCGCCCCGTGTTTTTATGACAGTTCTAGGTTGGCAAAATACATGTGAGAGTGTTGACGACATAACTGCAACTTTGGCAGCCCTGAGCACCAAGATAGATATCAGTGTCCTTTATCGTGGTTTAAGTCCTAAAAGCACCCATAACTTGGTTTCAGTGGTTTGCTACTATGGCCAGCATTATCATTGCTTTGCTTATAGTCATGACCACGGCCATTGGATTATGTATGATGACCAGACTGTTAAAGTAATTGGTGGATGGGCTGATGTTCTTACTATGTGTGAGAGAGGACATCTCCAGCCTCAGGTTCTCTTCTTTGAAGCTGTAAACTAG	4929	0.4283	MGHKKRNSAPRSKNSPAASPVSQSPIGGAAAKGSTSPDSDATNVFDQNLSNPSKNELVLFQSEGSDFSAIKVECERALTTFRRGNHNRAMKLMKELCLKEEGSPYSAFVYRIHGFICFKVASIITDCSAKQRHLKHAVESARRAVELSPNSIEYAHFHATVILEAATEGKDYEDVVHECERGLAIENPNDPAKETLQDESEQKVSSLEDRILHVQAELRQLIQKSNIASLSSWMKNLGNGEDRFRLIPIRRATEDPMEVRLVQARRPNEIKKVTKTPEERRKEIEVRVAAARLLQQKSEAPQSPNEGERDDRALDLSSGSSQRTGERRRHMRKNGSTAERRKWVLSYWDSVSMDVKKDCLRIKISDIISHFGSSKETLPKDVLSEALFYAEANKTWKFWVCGICAEIFSNPEGHRQHVMQAHLQTLSPKMQRVLPQHVDNEWLEMILNFSWKPLDVSAAVKMIDYKANLKSSSIPEDYLAQGYNDCFKDSTISYHGKESLGYSFGNCTTERSKYYKIADSNAREGIADQQFMANPVTDCWPVSDDKERAKLLEKIHGVFEILIRHKCIAASHLHKVIQFSMGEIQGLAAGSELLKHDVDQTPMCICFLGASQLKKILQFLQEMSHACGLGRYADKSSSPKNDLHDIIQSPEIREKIVLNGDASCLLLDESLLTQFTPGTAQESVFEDMVTPSSPDGISDSSGAFLSWLYSSRSIGDQLSTWIRTKEDKICQGQEMVRTLDKEFYQLHSLCQKKCDRLAYEEALQTIEDLCLEEGKKRGNVGEFVQRSYESVLKRRREEIAESENEMAYTGNRFEMECISNVLQEAEAMNVNNQYCCDETYPGATSQICDLESGENDEWRMKDCLHQMDGCVEIAIQKLKEHASIEISKVDAEIIRCVSEVQQLELKLGHVSANDYRAILVPLVKVYLKALLEDLAEKYAREKSDAAGEAFLAELALDSKKIGKGGNESTRHVEKTKDKKKNKDHRKTRDLKATSGSIHPSLQPTTLDSDLVSPDSDFQDHEVISMDDADLEHHEEEFRRKIELEEEEKKLEETLELQRRIENEAKQKHLAEQQKKLSGTCVEEVSDKLQGCQLKPVVDGSDVQEYGRLPMQEQLGKENGSPNNLDVVTATNGSMAPTKYLADSAPPKISLLHKQADILNGTVPEKGLPLPDRRAAKKHKRSKNSSKMVDGKLEYISLEENENIEDKHTDYHMREQAKFHNSQDAKHLLENNGVKVMKELQVEDEEEERFQADLKMAVRQSLDTYQAHGNLPFVSSLRMPQRSSSQVDRSGLAPLEDSAKDVNGASLLGTGLMNEVGEYNCFLNVIIQSLWHLSRFRVEFLGKPVSEHAHVGNPCVVCALYEIFTALDLASKDSRREAVAPTSLRIALSNLYPESNFFQEAQMNDASEVLGVIFDCLHQSFTRGSDVSNAESVESNCTGSWDCAADSCIVHSHFGMNIFEQMNCYHCGLESRRLKYTSFFHNINANALRTMKAMFPESSLDKLLNLVERNHQLACDLEAEGCGKLNHIHHFLSAPPRVFMTVLGWQNTCESVDDITATLAALSTKIDISVLYRGLSPKSTHNLVSVVCYYGQHYHCFAYSHDHGHWIMYDDQTVKVIGGWADVLTMCERGHLQPQVLFFEAVN	1642

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1g02041	1642	Coils	Coil	197	224	-	-
	Vivi1g02041	1642	Pfam	Protein of unknown function (DUF629)	345	872	IPR006865	-
	Vivi1g02041	1642	MobiDBLite	consensus disorder prediction	1	47	-	-
	Vivi1g02041	1642	PANTHER	UBIQUITIN SPECIFIC PROTEINASE	1	1641	-	-
	Vivi1g02041	1642	Pfam	Ubiquitin carboxyl-terminal hydrolase	1310	1618	IPR001394	GO:0004843\|GO:0016579
	Vivi1g02041	1642	Coils	Coil	785	805	-	-
	Vivi1g02041	1642	CDD	Peptidase_C19	1400	1639	-	-
	Vivi1g02041	1642	MobiDBLite	consensus disorder prediction	1161	1186	-	-
	Vivi1g02041	1642	Pfam	Protein of unknown function (DUF627)	76	187	IPR006866	-
	Vivi1g02041	1642	ProSitePatterns	Zinc finger C2H2 type domain signature.	401	422	IPR013087	-
	Vivi1g02041	1642	MobiDBLite	consensus disorder prediction	962	1016	-	-
	Vivi1g02041	1642	MobiDBLite	consensus disorder prediction	993	1012	-	-
	Vivi1g02041	1642	Gene3D	Cysteine proteinases	1296	1640	-	-
	Vivi1g02041	1642	Gene3D	Tetratricopeptide repeat domain	66	210	IPR011990	GO:0005515
	Vivi1g02041	1642	ProSiteProfiles	Ubiquitin specific protease (USP) domain profile.	1309	1641	IPR028889	-
	Vivi1g02041	1642	MobiDBLite	consensus disorder prediction	293	335	-	-
	Vivi1g02041	1642	SUPERFAMILY	Cysteine proteinases	1309	1639	IPR038765	-
	Vivi1g02041	1642	Coils	Coil	1033	1073	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi1g02041	Vivi-Chr1	43024258	43034406	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1g02041	66	1639	C2H2 Transcription Factor Family	AT3G47890	53.100	0.0	1587

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1g02041	-		-	gmx:100800030	2295.39