Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02039 ATGGGACACAAAAAGCGAAACTCCGCGCCTCGTTCCAAGAATTCGCCGGCGGCTTCTCCGGTGTCTCAATCTCCCATCGGCGGAGCCGCCGCTAAAGGTTCCACTTCACCCGACTCCGATGCCACCAACGTTTTCGATCAGAATCTTTCTAACCCTAGCAAGAACGAATTGGTTCTTTTTCAATCTGAGGGTTCTGATTTCTCTGCGATTAAGGTAGAATGTGAGCGAGCCCTAACCACGTTTCGTCGTGGGAATCACAATAGGGCGATGAAGCTCATGAAGGAGTTGTGCTTGAAGGAGGAGGGTTCGCCTTACTCCGCTTTCGTTTATCGAATTCATGGATTTATATGTTTCAAGGTGGCTTCGATTATTACTGATTGTAGCGCTAAGCAGCGGCATTTGAAGCATGCTGTTGAATCGGCTAGGAGAGCTGTTGAGCTTTCGCCGAATTCGATTGAGTATGCACATTTCCATGCCACTGTGATATTGGAAGCAGCGACTGAGGGGAAGGATTATGAGGATGTGGTGCACGAGTGTGAGAGAGGGCTTGCTATTGAAAACCCAAATGATCCTGCTAAGGAGACGTTGCAGGATGAGAGCGAGCAGAAGGTGTCTAGTTTGGAAGACCGTATATTACATGTGCAGGCTGAGTTGAGGCAGCTGATTCAGAAGTCTAACATAGCTTCGCTGTCGTCTTGGATGAAAAATCTGGGTAATGGGGAAGACAGGTTTCGGTTGATTCCTATAAGGAGGGCTACGGAGGACCCTATGGAGGTTAGGTTAGTTCAGGCTAGAAGGCCAAATGAGATTAAGAAGGTTACCAAGACGCCCGAGGAAAGAAGAAAAGAGATTGAAGTTAGGGTAGCTGCTGCAAGACTGTTGCAGCAGAAGTCAGAGGCACCGCAGTCTCCGAATGAAGGAGAAAGGGATGACAGGGCATTGGATTTGTCTTCAGGGTCTAGTCAGAGGACAGGTGAGAGGCGTAGGCATATGAGAAAAAATGGCTCTACAGCCGAAAGGAGAAAGTGGGTGCTATCTTATTGGGATTCAGTGAGTATGGATGTGAAGAAGGACTGCCTTAGGATTAAAATATCTGATATCATCTCCCACTTTGGCTCTTCAAAGGAGACTCTGCCAAAAGATGTTTTATCAGAAGCTCTGTTTTATGCCGAAGCCAATAAAACATGGAAATTTTGGGTTTGTGGCATTTGTGCTGAGATCTTTTCCAATCCGGAAGGTCATAGGCAGCATGTTATGCAGGCACACCTTCAGACTCTCTCTCCAAAAATGCAGAGAGTTTTGCCTCAACATGTTGACAATGAATGGCTTGAGATGATTCTTAATTTTTCCTGGAAGCCTTTGGATGTCTCAGCTGCAGTTAAAATGATTGACTATAAAGCAAATCTCAAAAGTTCATCTATTCCAGAGGATTATCTTGCTCAGGGCTACAATGACTGTTTTAAAGATTCAACCATCTCATACCATGGAAAGGAAAGTTTAGGATACAGTTTTGGTAATTGTACAACAGAAAGAAGCAAGTATTATAAAATTGCTGATAGTAATGCCAGAGAAGGCATTGCAGACCAACAGTTTATGGCAAATCCTGTTACTGATTGTTGGCCAGTATCTGATGACAAGGAGCGTGCAAAACTTCTAGAGAAAATCCATGGAGTATTTGAAATACTTATTAGACACAAATGTATTGCTGCTAGTCATCTTCACAAGGTCATACAATTTAGTATGGGTGAGATCCAAGGTCTTGCTGCTGGTTCTGAACTTCTAAAACATGATGTAGACCAAACACCAATGTGCATATGCTTTCTGGGAGCTTCACAACTTAAGAAAATTCTCCAATTTCTGCAGGAAATGTCTCATGCTTGTGGGTTGGGTAGATATGCTGATAAAAGTAGTAGTCCCAAGAATGATTTGCATGATATCATCCAGAGTCCCGAGATCAGAGAGAAAATTGTTCTCAATGGAGATGCATCATGCCTTCTCCTGGATGAGTCTCTACTTACACAATTCACTCCTGGTACAGCCCAGGAGTCTGTTTTTGAGGACATGGTCACCCCAAGTTCTCCTGATGGAATTTCAGACAGTAGTGGTGCTTTTCTGTCCTGGTTATATTCAAGTCGGTCTATTGGGGATCAATTGTCTACATGGATTCGGACCAAAGAAGATAAAATATGCCAAGGACAAGAAATGGTCCGGACACTTGACAAGGAGTTTTATCAATTACATAGTTTGTGTCAAAAGAAGTGTGACCGTTTAGCCTATGAGGAAGCACTACAGACAATTGAGGATCTTTGTCTTGAAGAAGGTAAGAAGAGGGGGAATGTGGGTGAATTTGTGCAGCGAAGCTATGAGTCTGTCTTAAAACGGCGGAGGGAAGAGATTGCTGAGAGTGAAAATGAAATGGCGTATACTGGAAATAGGTTTGAGATGGAATGTATATCAAATGTTTTGCAAGAAGCAGAAGCGATGAATGTTAATAATCAATATTGCTGTGATGAAACTTATCCTGGCGCGACTTCTCAGATATGTGACTTAGAATCCGGTGAAAATGATGAATGGAGAATGAAGGACTGTTTGCATCAAATGGATGGTTGTGTAGAAATTGCTATTCAGAAACTTAAAGAGCACGCATCTATAGAGATTAGCAAAGTTGACGCTGAAATAATAAGATGTGTTTCAGAGGTGCAGCAATTGGAACTCAAGCTTGGACATGTTTCTGCCAATGATTATCGAGCAATACTTGTGCCGCTGGTGAAGGTGTACCTAAAGGCACTTTTGGAAGATTTGGCTGAGAAATATGCTAGGGAGAAATCTGACGCAGCAGGTGAAGCATTTTTGGCTGAACTTGCTCTTGATTCCAAGAAGATTGGCAAAGGGGGAAATGAGAGCACTAGACATGTGGAGAAGACAAAGGATAAGAAGAAAAATAAAGATCACAGAAAAACAAGAGATTTGAAGGCCACAAGTGGTTCTATCCATCCCTCGCTTCAGCCTACTACTCTAGATTGCAGTTCTGATCTAGTATCACCTGATAGTGACTTTCAAGATCATGAGGTTATTTCCATGGATGATGCTGATTTGGAACACCACGAAGAGGAATTTAGACGTAAAATTGAACTTGAAGAGGAGGAAAAAAAGCTTGAAGAAACCTTGGAGCTTCAACGGAGGATTGAAAACGAGGCCAAACAGAAGCACCTTGCTGAGCAACAGAAGAAATTATCAGGTACATGTGTAGAGGAAGTGTCTGACAAACTTCAAGGTTGTCAATTGAAGCCTGTTGTCGACGGCTCAGATGTGCAAGAATATGGAAGACTACCTATGCAGGAACAGTTGGGAAAGGAGAATGGGAGCCCAAACAATCTGGACGTCGTTACCGCAACAAATGGTTCCATGGCGCCAACTAAATATTTGGCTGATTCAGCTCCCCCCAAAATTAGTCTTTTGCATAAACAAGATATACTCAATGGAACTGTTCCAGAGAAGGGTCTACCTTTGCCTGATAGGCGTGCAGCAAAAAAACATAAGCGGAGTAAGAATTCGTCTAAAATGGTTGATGGAAAGTTGGAGTACATTTCATTGGAGGAAAATGAGAATATTGAGGATAAACATACTGACTATCACATGAGAGAGCAGGCTAAGTTTCATAACAGTCAAGATGCCAAACATTTGTTGGAAAACAATGGAGTAAAGGTGATGAAAGAATTGCAAGTAGAAGATGAGGAGGAGGAAAGATTCCAAGCTGATCTTAAAATGGCTGTTCGCCAAAGCCTAGACACATATCAAGCACATGGAAATTTGCCTTTTGTTTCAAGTTTGAGGATGCCACAGAGATCTTCCTCACAGGTAGACCGTTCAGGTCTTGCACCTTTGGAAGATTCAGCTAAAGACGTGAATGGAGCTAGTTTACTTGGTACAGGACTGATGAATGAAGTGGGGGAATATAATTGTTTCCTTAATGTTATTATTCAGTCTTTGTGGCATTTAAGCCGCTTTCGGGTGGAATTTCTTGGCAAACCAGTATCAGAGCATGCTCATGTCGGTAATCCCTGTGTTGTCTGTGCCTTGTATGAAATATTTACCGCTCTAGACCTTGCTTCAAAGGATTCAAGGAGGGAAGCAGTTGCACCTACTTCCCTGCGGATAGCTCTAAGCAACCTATATCCAGAGAGTAACTTCTTCCAGGAGGCTCAGATGAATGATGCTTCCGAGGTACTGGGAGTAATATTTGACTGCCTTCATCAATCATTTACCCGTGGTTCAGATGTTTCTAATGCAGAATCAGTGGAAAGTAACTGCACAGGGTCTTGGGATTGTGCAGCTGATAGTTGTATAGTACATTCGCATTTTGGAATGAACATTTTTGAACAGATGAACTGCTACCATTGTGGTCTTGAGTCCAGACGTTTGAAGTATACTTCTTTCTTTCACAATATAAATGCCAATGCCCTTAGGACAATGAAGGCTATGTTTCCTGAGAGCTCTCTTGACAAGCTTTTGAATCTTGTGGAGAGGAACCATCAACTGGCTTGTGATCTAGAGGCTGAGGGCTGTGGCAAGCTCAACCACATTCATCACTTTCTTTCAGCCCCGCCCCGTGTTTTTATGACAGTTCTAGGTTGGCAAAATACATGTGAGAGTGTTGACGACATAACTGCAACTTTGGCAGCCCTGAGCACCAAGATAGATATCAGTGTCCTTTATCGTGGTTTAAGTCCTAAAAGCACCCATAACTTGGTTTCAGTGGTTTGCTACTATGGCCAGCATTATCATTGCTTTGCTTATAGTCATGACCACGGCCATTGGATTATGTATGATGACCAGACTGTTAAAGTAATTGGTGGATGGGCTGATGTTCTTACTATGTGTGAGAGAGGACATCTCCAGCCTCAGGTTCTCTTCTTTGAAGCTGTAAACTAG 4932 0.4282 MGHKKRNSAPRSKNSPAASPVSQSPIGGAAAKGSTSPDSDATNVFDQNLSNPSKNELVLFQSEGSDFSAIKVECERALTTFRRGNHNRAMKLMKELCLKEEGSPYSAFVYRIHGFICFKVASIITDCSAKQRHLKHAVESARRAVELSPNSIEYAHFHATVILEAATEGKDYEDVVHECERGLAIENPNDPAKETLQDESEQKVSSLEDRILHVQAELRQLIQKSNIASLSSWMKNLGNGEDRFRLIPIRRATEDPMEVRLVQARRPNEIKKVTKTPEERRKEIEVRVAAARLLQQKSEAPQSPNEGERDDRALDLSSGSSQRTGERRRHMRKNGSTAERRKWVLSYWDSVSMDVKKDCLRIKISDIISHFGSSKETLPKDVLSEALFYAEANKTWKFWVCGICAEIFSNPEGHRQHVMQAHLQTLSPKMQRVLPQHVDNEWLEMILNFSWKPLDVSAAVKMIDYKANLKSSSIPEDYLAQGYNDCFKDSTISYHGKESLGYSFGNCTTERSKYYKIADSNAREGIADQQFMANPVTDCWPVSDDKERAKLLEKIHGVFEILIRHKCIAASHLHKVIQFSMGEIQGLAAGSELLKHDVDQTPMCICFLGASQLKKILQFLQEMSHACGLGRYADKSSSPKNDLHDIIQSPEIREKIVLNGDASCLLLDESLLTQFTPGTAQESVFEDMVTPSSPDGISDSSGAFLSWLYSSRSIGDQLSTWIRTKEDKICQGQEMVRTLDKEFYQLHSLCQKKCDRLAYEEALQTIEDLCLEEGKKRGNVGEFVQRSYESVLKRRREEIAESENEMAYTGNRFEMECISNVLQEAEAMNVNNQYCCDETYPGATSQICDLESGENDEWRMKDCLHQMDGCVEIAIQKLKEHASIEISKVDAEIIRCVSEVQQLELKLGHVSANDYRAILVPLVKVYLKALLEDLAEKYAREKSDAAGEAFLAELALDSKKIGKGGNESTRHVEKTKDKKKNKDHRKTRDLKATSGSIHPSLQPTTLDCSSDLVSPDSDFQDHEVISMDDADLEHHEEEFRRKIELEEEEKKLEETLELQRRIENEAKQKHLAEQQKKLSGTCVEEVSDKLQGCQLKPVVDGSDVQEYGRLPMQEQLGKENGSPNNLDVVTATNGSMAPTKYLADSAPPKISLLHKQDILNGTVPEKGLPLPDRRAAKKHKRSKNSSKMVDGKLEYISLEENENIEDKHTDYHMREQAKFHNSQDAKHLLENNGVKVMKELQVEDEEEERFQADLKMAVRQSLDTYQAHGNLPFVSSLRMPQRSSSQVDRSGLAPLEDSAKDVNGASLLGTGLMNEVGEYNCFLNVIIQSLWHLSRFRVEFLGKPVSEHAHVGNPCVVCALYEIFTALDLASKDSRREAVAPTSLRIALSNLYPESNFFQEAQMNDASEVLGVIFDCLHQSFTRGSDVSNAESVESNCTGSWDCAADSCIVHSHFGMNIFEQMNCYHCGLESRRLKYTSFFHNINANALRTMKAMFPESSLDKLLNLVERNHQLACDLEAEGCGKLNHIHHFLSAPPRVFMTVLGWQNTCESVDDITATLAALSTKIDISVLYRGLSPKSTHNLVSVVCYYGQHYHCFAYSHDHGHWIMYDDQTVKVIGGWADVLTMCERGHLQPQVLFFEAVN 1643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02039 1643 Coils Coil 197 224 - -
Vivi1g02039 1643 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1642 - -
Vivi1g02039 1643 Pfam Protein of unknown function (DUF629) 345 872 IPR006865 -
Vivi1g02039 1643 MobiDBLite consensus disorder prediction 1 47 - -
Vivi1g02039 1643 MobiDBLite consensus disorder prediction 962 1013 - -
Vivi1g02039 1643 Coils Coil 785 805 - -
Vivi1g02039 1643 Pfam Ubiquitin carboxyl-terminal hydrolase 1311 1619 IPR001394 GO:0004843|GO:0016579
Vivi1g02039 1643 Pfam Protein of unknown function (DUF627) 76 187 IPR006866 -
Vivi1g02039 1643 ProSitePatterns Zinc finger C2H2 type domain signature. 401 422 IPR013087 -
Vivi1g02039 1643 Coils Coil 1035 1075 - -
Vivi1g02039 1643 CDD Peptidase_C19 1401 1640 - -
Vivi1g02039 1643 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1310 1642 IPR028889 -
Vivi1g02039 1643 Gene3D Cysteine proteinases 1297 1641 - -
Vivi1g02039 1643 Gene3D Tetratricopeptide repeat domain 66 210 IPR011990 GO:0005515
Vivi1g02039 1643 MobiDBLite consensus disorder prediction 293 335 - -
Vivi1g02039 1643 MobiDBLite consensus disorder prediction 1163 1187 - -
Vivi1g02039 1643 SUPERFAMILY Cysteine proteinases 1310 1640 IPR038765 -
Vivi1g02039 1643 MobiDBLite consensus disorder prediction 993 1013 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02039 Vivi-Chr1 43024258 43034406 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02039 66 1640 C2H2 Transcription Factor Family AT3G47890 52.945 0.0 1584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02039 1 43024258 43034406 Vivi1g02039 1 43024258 43034406 ECH