Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02025 ATGAAAATCACCATTCTAGCTTCTTCATTCTTTGTGATCTTTGCAACATTTTTCAACCCTTCTTCTCTTGCTCTCACTCAAGATGGTCAAACATTGTTGGAGATTAAAAGTACTTGGAATGATACTAAGAATGTTCTTAGCAACTGGCAAGATTTTGATGAGTCTCCTTGTGCTTGGACTGGAATCTCATGTCATCCTGATGATGAACAAAGAGTTCGTTCAATAAACTTACCGTATATGCAGCTTGAAGGGATCATATCTCCCAGTATTGGTAAACTTAGTAGATTGCAGAGATTAGCACTTCATCAGAATGGTTTACATGGAATCATTCCTACTGAAATTACCAATTGTACTGAGCTTAGAGCCTTGTACTTGAGGGCTAATTATTTCCAAGGAGGCTTACCATCAGGCATTGGAAATCTTTCATTTTTGAATATAATGGATGTTTCAAGCAATTCATTGAAAGGAGCTATACCTTCCTCGATCGGCCGTCTCTCACATTTGCAAGTTTTGAACCTGTCCACCAATTTCTTTTCTGGTGAAATCCCCGACATTGGAGTACTAAGCACGTTCCAGAAGAACTCGTTTATTGGAAATTTAGATCTTTGCGGAAGGCAAATCCAAAAGCCATGTCGAACATCACTTGGTTTCCCTGTCGTGATACCACATGATGCTGTAAGCGATGAAGCTTCAGTCCCTACGAAAAGATCTTCTTCACATTACTTAAAGGCTGTGCTAATCGGGGCAGTGGCAACCTTGGGCCTTGCACTTATCATAGCCCTTTCATTACTTTGGATTCGTTCATCGTCGAAGAAGGAAAGAGCTGTTAGGAAATACACAGAAGTCAAGAAGCAAGTTGATCCAACAGCAAGTGCTAAACTAATTACGTTCCATGGTGATATGCCATACACATCATCTGAAATTATAGAAAAGCTGGAGTCTCTCGACGAAGAGGATATAGTAGGGTCAGGAGGATTTGGTACTGTTTACCGAATGGTGATGAATGACTGTGGCACATTTGCTGTTAAGAGAATTGACCGAAGCCGTGAAGGGTCTGATCAAGTGTTTGAAAGGGAACTCGAGATCTTAGGGAGCATCAAACACATAAATTTAGTAAACCTTCGCGGTTACTGCAGACTCCCTTCTTCAAGGCTCCTTATCTATGATTATCTGGCCTTAGGCAGCTTAGATGATCTCTTGCATGAAAATGTTGAACGACAACCCTTGAACTGGAATGATCGTCTAAAGATAACCCTTGGTTCTGCTCGGGGTTTGGCATACTTGCACCATGAATGCTCCCCAAAAATTGTGCACCGTGACATAAAATCTAGCAACATCCTTCTTAATGAAAACATGGAGCCTCACATCTCTGATTTCGGTCTTGCAAAGCTCTTAGTCGATGAAGATGCGCATGTTACCACAGTGGTTGCTGGCACATTTGGCTACTTGGCACCAGAGTATCTTCAAAGTGGGAGAGCAACTGAGAAGTCAGATGTATATAGCTTCGGAGTTCTATTACTCGAACTTGTAACCGGAAAGAGGCCTACGGATCCTTCCTTTGTAAAGAGAGGCTTAAATGTTGTTGGTTGGATGAATACGTTATTGAAAGAAAACAGATTGGAAGACGTGGTAGACAGAAGATGCACTGATGCAGATGCTGAGACTCTTGAAGTAATTTTGGAGCTAGCAGCAAGATGCACCGATTCAAATGCTGATGACCGTCCTTCGATGAACCAAGTATTGCAGTTGCTGGAGCAAGAGGTTATGACCCCTTGTCCAAGCGAGTTTTACGAGTCTCATTCGGATCACTGA 1812 0.4194 MKITILASSFFVIFATFFNPSSLALTQDGQTLLEIKSTWNDTKNVLSNWQDFDESPCAWTGISCHPDDEQRVRSINLPYMQLEGIISPSIGKLSRLQRLALHQNGLHGIIPTEITNCTELRALYLRANYFQGGLPSGIGNLSFLNIMDVSSNSLKGAIPSSIGRLSHLQVLNLSTNFFSGEIPDIGVLSTFQKNSFIGNLDLCGRQIQKPCRTSLGFPVVIPHDAVSDEASVPTKRSSSHYLKAVLIGAVATLGLALIIALSLLWIRSSSKKERAVRKYTEVKKQVDPTASAKLITFHGDMPYTSSEIIEKLESLDEEDIVGSGGFGTVYRMVMNDCGTFAVKRIDRSREGSDQVFERELEILGSIKHINLVNLRGYCRLPSSRLLIYDYLALGSLDDLLHENVERQPLNWNDRLKITLGSARGLAYLHHECSPKIVHRDIKSSNILLNENMEPHISDFGLAKLLVDEDAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFVKRGLNVVGWMNTLLKENRLEDVVDRRCTDADAETLEVILELAARCTDSNADDRPSMNQVLQLLEQEVMTPCPSEFYESHSDH 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02025 603 SUPERFAMILY Protein kinase-like (PK-like) 298 585 IPR011009 -
Vivi1g02025 603 SMART serkin_6 315 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g02025 603 Gene3D Transferase(Phosphotransferase) domain 1 391 594 - -
Vivi1g02025 603 ProSitePatterns Protein kinases ATP-binding region signature. 321 343 IPR017441 GO:0005524
Vivi1g02025 603 Gene3D Ribonuclease Inhibitor 25 213 IPR032675 -
Vivi1g02025 603 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 391 596 - -
Vivi1g02025 603 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Vivi1g02025 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 436 448 IPR008271 GO:0004672|GO:0006468
Vivi1g02025 603 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 188 - -
Vivi1g02025 603 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 72 586 - -
Vivi1g02025 603 ProSiteProfiles Protein kinase domain profile. 315 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g02025 603 Pfam Protein kinase domain 317 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g02025 603 Gene3D Phosphorylase Kinase; domain 1 274 390 - -
Vivi1g02025 603 SUPERFAMILY L domain-like 25 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02025 Vivi-Chr1 42592484 42595916 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02025 7 593 Receptor kinase-like Gene Family AT2G35620 49.490 0.0 565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Vivi1g02025 Pkinase 7.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02025 - - gmx:100797653 1021.92