Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02023 ATGGCTGGTGAAAGACCCTTTATAAATTCTCCTGCAAATAATTCAAACATGAATACTTTGTTTCATAATCAACAACATGGAAACTCTTCTCAACAACCTCTTGATTCTCTCTTCCTTTCTTCTTCTCTTCCTTTCTTCGGTTCAAGAACTATGGTGAGTTTTGAAGATGTTCAAGGAGGAAAGAAAAGGTGCAACAATTATCTCTTCAACGGGTTCGATCTAGACGAAAACGGAGACGATGAGATGGATGAGTACTTTCATCAATCGGAGAAGAAGCGGCGACTCTCTGTGGAACAAGTTCAGTTTCTTGAGAAAAGCTTCGAGGTGGAGAACAAGCTTGAACCTGATAGGAAAACCAAGTTAGCTAAAGATCTTGGCTTGCAGCCACGGCAAGTTGCTATCTGGTTTCAGAATCGTCGTGCGAGATGGAAGAACAAACAGCTTGAGAAGGATTATGAGTCGCTTAACGACAGTTATGAGTCTCTTAAGACTGATTATGAGAACATCCTCAAGGAGAAAGAAAGGTTACAATCTGAGGTGGAAAGTCTCTCTAAAAAGGTACTTGCAAGGGAGAATCAAGAGAGGGAAAGTGAAACAAAGAAACTATTGCAGGAACCAGTAATGAATAAACCATTGGTTGATTCAGTTTCTGAGGGTGAAGGATCAAAATTGTCAATTGTTGAGGCTTGTAATGATAATAATATTAGCAGACAAGAAGATATAAGTTCAGCAAGGAGTGACATATTGGATTGTGACAGTCCATGTTACAAGGAAAGGGTGCCTGAATATCAATCAGACCTATCACAAGATGATGAAGATAATTTGTTGCCTCCTTATAACATCTTTACAAAACTTGAAGATGTTCATTACTCCAACCCGAATCATAACTCGTCTGGTTATGGATTTCAAGAGGACGATCATCATCACGCTCTTTGGTCGTGGTCCGGTTACTAG 954 0.3973 MAGERPFINSPANNSNMNTLFHNQQHGNSSQQPLDSLFLSSSLPFFGSRTMVSFEDVQGGKKRCNNYLFNGFDLDENGDDEMDEYFHQSEKKRRLSVEQVQFLEKSFEVENKLEPDRKTKLAKDLGLQPRQVAIWFQNRRARWKNKQLEKDYESLNDSYESLKTDYENILKEKERLQSEVESLSKKVLARENQERESETKKLLQEPVMNKPLVDSVSEGEGSKLSIVEACNDNNISRQEDISSARSDILDCDSPCYKERVPEYQSDLSQDDEDNLLPPYNIFTKLEDVHYSNPNHNSSGYGFQEDDHHHALWSWSGY 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02023 317 Coils Coil 138 193 - -
Vivi1g02023 317 ProSitePatterns 'Homeobox' domain signature. 121 144 IPR017970 GO:0000981|GO:0006355
Vivi1g02023 317 ProSiteProfiles 'Homeobox' domain profile. 86 146 IPR001356 GO:0003677
Vivi1g02023 317 MobiDBLite consensus disorder prediction 8 33 - -
Vivi1g02023 317 SUPERFAMILY Homeodomain-like 77 148 IPR009057 -
Vivi1g02023 317 CDD homeodomain 91 147 IPR001356 GO:0003677
Vivi1g02023 317 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 77 236 IPR045224 GO:0003700
Vivi1g02023 317 FunFam homeobox-leucine zipper protein ATHB-6-like 94 140 - -
Vivi1g02023 317 PRINTS Lambda-repressor HTH signature 126 142 IPR000047 GO:0003677
Vivi1g02023 317 PRINTS Lambda-repressor HTH signature 117 126 IPR000047 GO:0003677
Vivi1g02023 317 MobiDBLite consensus disorder prediction 1 33 - -
Vivi1g02023 317 Pfam Homeodomain 91 145 IPR001356 GO:0003677
Vivi1g02023 317 Pfam Homeobox associated leucine zipper 146 187 IPR003106 GO:0006355|GO:0043565
Vivi1g02023 317 SMART HOX_1 89 150 IPR001356 GO:0003677
Vivi1g02023 317 Gene3D - 85 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02023 Vivi-Chr1 42552093 42554028 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02023 26 314 Homeobox Transcription Factor Family AT3G01470 36.393 1.96e-41 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi1g02023 Homeodomain 3.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02023 - - mtr:11437653 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02023 1 42552093 42554028 Vivi1g02023 1 42552093 42554028 ECH