Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02011 ATGGAAACCAACAAGCTTAGATTGCTTTTTTTCTATGTATTTTATCTTGCTATATTCCCTATCTTTGAAGCTAAAATAATTCACTTCGACCAACACTGGCAAAGACGATCTCATGAAGCCACAAAAGCTGCACATAAGGCTTACCAGTTAAACCCTCATGGTGTTGCTGCTTCTTTCAACAACGATGTCCACGGGATGTTCAGTGGTTTCAATGGTTCAAGGAGGGGTTTGACTAGAAAACACCCAAACAAAGGTCCATGCAAAGCGACAAATCCCATCGATAGTTGCTGGAGATGTGATCCTAATTGGGAAAAGAATCGCAAGAAGCTAGCCGATTGTGCTCTTGGTTTTGGCCGCGGCACGACAGGAGGCAAAGATGGTAGAATCTATGTTGTCACTGATCCGTCCGACAACGAGCTTGTTAACCCGAAACCAGGGACATTGCGACACGCAGCCATTCAAAAGGAGCCGTTATGGATCATTTTTAAACATAGCATGACCATCAAATTGAAAGCGGAGCTTCTACTAACAGATCACAAGACCATAGATGCACGTGGTGCAAATGTTCATATTTGTGGAGGTGCTCAAATAACATTGCAATATGTGAAAAACATCATCATTCATGGGTTACACGTCCATGATAATAAACCAGTTAGTGGTGGACTGATGAGAGACTCGATGAGTCACTTTGGACAACGTTCGACGAGTGATGGTGATGGAATATCACTGTTTGGAGCTAGTCATATTTGGATAGATCACATTTCAATGTGGAACTGTTTTGATGGTTTGATTGACGTCGTAGCGGGATCAACCGCTGTAACCATTTCCAACTGTCATATGACACATCAAGACCATGTTATGTTATTTGGAGCAAGTGATGGGTTCTCAGGAGATCAAATAATGCAAATAACAGTAGCTTTCAACCATTTTGGGAAAGGATTGATACAAAGAATGCCAAGGTGTAGATGGGGTTTCTTTCACATTGTTAACAATGACTACACTCATTGGCTTATGTATGCCATTGGTGGTAGCACACATCCTACCATACTCAGCCAGGGTAACAGGTTTATTGCTCCTGTAAACCCAAATGCAAAAGAGGTGACAAAGAGGGATTATTCACCTGAAAGTGTGTGGAAGAATTGGAATTGGATATCAGAGAATGACTTGATGATGAATGGAGCCTTTTTTAAACAGTCTGGAAAAAAGGTTGCAATGCCGAATGACGATATCCGGCCAAAGCATGGGAGTTTTGCAGCAGACCTTACTAAATATGCAGGTTCTATAAAATGTGTACCAAACAAGCCATGTTGA 1311 0.4165 METNKLRLLFFYVFYLAIFPIFEAKIIHFDQHWQRRSHEATKAAHKAYQLNPHGVAASFNNDVHGMFSGFNGSRRGLTRKHPNKGPCKATNPIDSCWRCDPNWEKNRKKLADCALGFGRGTTGGKDGRIYVVTDPSDNELVNPKPGTLRHAAIQKEPLWIIFKHSMTIKLKAELLLTDHKTIDARGANVHICGGAQITLQYVKNIIIHGLHVHDNKPVSGGLMRDSMSHFGQRSTSDGDGISLFGASHIWIDHISMWNCFDGLIDVVAGSTAVTISNCHMTHQDHVMLFGASDGFSGDQIMQITVAFNHFGKGLIQRMPRCRWGFFHIVNNDYTHWLMYAIGGSTHPTILSQGNRFIAPVNPNAKEVTKRDYSPESVWKNWNWISENDLMMNGAFFKQSGKKVAMPNDDIRPKHGSFAADLTKYAGSIKCVPNKPC 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02011 436 Gene3D - 90 429 IPR012334 -
Vivi1g02011 436 SUPERFAMILY Pectin lyase-like 91 426 IPR011050 -
Vivi1g02011 436 PANTHER PECTATE LYASE 18-RELATED 40 434 IPR045032 GO:0030570
Vivi1g02011 436 Pfam Pectate lyase 187 356 IPR002022 -
Vivi1g02011 436 SMART amb_all 165 362 IPR002022 -
Vivi1g02011 436 Pfam Pectate lyase, N terminus 26 77 IPR007524 GO:0030570
Vivi1g02011 436 PRINTS Pollen allergen Amb family signature 173 189 IPR018082 -
Vivi1g02011 436 PRINTS Pollen allergen Amb family signature 237 258 IPR018082 -
Vivi1g02011 436 PRINTS Pollen allergen Amb family signature 113 130 IPR018082 -
Vivi1g02011 436 PRINTS Pollen allergen Amb family signature 137 162 IPR018082 -
Vivi1g02011 436 PRINTS Pollen allergen Amb family signature 339 358 IPR018082 -
Vivi1g02011 436 PRINTS Pollen allergen Amb family signature 381 405 IPR018082 -
Vivi1g02011 436 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02011 Vivi-Chr1 42430012 42431801 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02011 1 436 Polysaccharide Lyase AT3G01270 53.684 4.99e-176 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02011 K01728 - gmx:100801864 647.121