Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02007 ATGGAGAGTGATTCTGGAAGATCTGGTGATGGAGATGGTGGAGTTCTCAAAGAAGAGAAGAGAAGTGATGATGAGACTCATCATCATCAAAAGGAGGAGACTATTGTTGAGGAACCACCCATTGCTAGTACTGAAAAATCAATTGAGACTAGACCAATCACATCCTCTCCCAAAAATACTAAGGTTGATGATCAGCTTGAGACAACAAAGGCTCAAATGTGTGAAGTGAGAGAAGAAAATCAACGGTTAAAAACGCGTCTCAGCAAAATAATGACCGAATATCGAGCACTAGAAATGCAATTTCACAGCATGGTTAATAAGCAAGAAACAAAAAAGAACAATGTTGATCACAATGATAATAACCATGATGAAATAATGGCGGAATCAGATCTTGTTTCCCTTAGCCTTGGAAGAGCTCCTAGTAACAACATTCCGAAAAATGAAGAGAAAATGAACAAAGTCTCTAAGCTAGCATTGAACAATGATGATGAAGAATTTAAACAAGAGTTGACTCTTGGATTGGATTGTAAATTCGAAACATCGAAATCAGGTAGCACAACTGAAGGATTGCCAAATCAAAATCCAAGTCCAGTGAATAGTTGTGAAGTGGTTCCAACGAAGGATGAAGAAACCGGGGTAACTTGGCCGCCAAGTAAGACACCGATCAATAATAAGACGGTGAGAGATGCAGCTGAGGATGAAGTTTCTCAGCAAACTCCAGCAAAGAAAGCTAGAGTTTGTGTTAGAGCAAGATGTGACACACCAACGATGAATGATGGATGCCAATGGAGGAAATATGGACAAAAGATTGCAAAAGGAAATCCTTGCCCTAGGGCTTACTACCGTTGCACAGTTGCACCATCATGTCCAGTTAGAAAACAGGTGCAAAGATGTGTTGATGACATGTCTATTTTAATCACAACCTATGAAGGAACACACAACCACACTCTTCCACTTTCAGCCACAGCAATGGCATCCACAACTTCCGCCGCCGCATCCATGCTACTATCAGGCTCATCAACTTCCCACCCCGGTTCAATCCCCTCAACACAAACCAACAACAATCTCCATGGCCTAAACTTCTACCTACCCGACGGTTCAAAGTCGAATCAACTATACCTATCCAACCCTGCACTATCATCTCAACATTCCCATCCAACTATCACTCTTGACCTCACCACAAACCCATCATCAAACCCTTCATCCTCATCACCCTTTGTTAGATTCAACTCAAACTACAACAACAACAACCAGTTACCAAGATACTCTTCTTCCACAAGCCTCAGCTTTAGTTCTCCTGAATCCAACACAATGCATTGGAATAGCTTCCTCAATTATGCTACCACTCAGAATCAACAACCATATCATAACAACAGAAACCCTAATATTAATAATCTCAACACTCTAAACTTTGGTAGACAACAAAACACAATGGAAAGTATATACCAAACCTACATGCAAAAAAACAATGGTTTACCTTCAGATAGTACTATAACTGCAGCAACAAAAGCCATCACAGCAGATCCAACTTTTCAATCAGCTTTAGCTGCAGCACTTACAACACTTATTGGAAACAACACTCGAACTCAACAAGGTAATCATCAAAATCAAAGTGTAGGAGAAAATTTGAGTCAGAAAATGAAATGGGCTGAGATGTTTCCGGTGTCTTCAAGTTCATTGCCTTCATCAAGTTCTAAAGTAATTGGTTGTGCTTCGAGTTTCTTGAACAAAACCGCGCCAGTGAACTCACAGACAGGAAGCTTGATGTCACTGTCGCCTTCTTTGCCATTTGCTACAGCCAAAAGTGCTTCTGCATCTCCTCCTGGGAATACTAGTGATAACTCCAATTAG 1851 0.4073 MESDSGRSGDGDGGVLKEEKRSDDETHHHQKEETIVEEPPIASTEKSIETRPITSSPKNTKVDDQLETTKAQMCEVREENQRLKTRLSKIMTEYRALEMQFHSMVNKQETKKNNVDHNDNNHDEIMAESDLVSLSLGRAPSNNIPKNEEKMNKVSKLALNNDDEEFKQELTLGLDCKFETSKSGSTTEGLPNQNPSPVNSCEVVPTKDEETGVTWPPSKTPINNKTVRDAAEDEVSQQTPAKKARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPSCPVRKQVQRCVDDMSILITTYEGTHNHTLPLSATAMASTTSAAASMLLSGSSTSHPGSIPSTQTNNNLHGLNFYLPDGSKSNQLYLSNPALSSQHSHPTITLDLTTNPSSNPSSSSPFVRFNSNYNNNNQLPRYSSSTSLSFSSPESNTMHWNSFLNYATTQNQQPYHNNRNPNINNLNTLNFGRQQNTMESIYQTYMQKNNGLPSDSTITAATKAITADPTFQSALAAALTTLIGNNTRTQQGNHQNQSVGENLSQKMKWAEMFPVSSSSLPSSSSKVIGCASSFLNKTAPVNSQTGSLMSLSPSLPFATAKSASASPPGNTSDNSN 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02007 616 SUPERFAMILY WRKY DNA-binding domain 250 318 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi1g02007 616 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 35 536 IPR044810 GO:0003700
Vivi1g02007 616 MobiDBLite consensus disorder prediction 47 62 - -
Vivi1g02007 616 MobiDBLite consensus disorder prediction 377 412 - -
Vivi1g02007 616 Pfam WRKY DNA -binding domain 258 315 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi1g02007 616 MobiDBLite consensus disorder prediction 1 64 - -
Vivi1g02007 616 Coils Coil 80 100 - -
Vivi1g02007 616 MobiDBLite consensus disorder prediction 181 200 - -
Vivi1g02007 616 MobiDBLite consensus disorder prediction 1 39 - -
Vivi1g02007 616 FunFam probable WRKY transcription factor 31 242 319 - -
Vivi1g02007 616 SMART WRKY_cls 257 317 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi1g02007 616 ProSiteProfiles WRKY domain profile. 252 318 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi1g02007 616 Gene3D WRKY domain 241 319 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02007 Vivi-Chr1 42375777 42379283 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02007 73 545 WRKY Transcription Factor Family AT5G15130 42.222 1.58e-83 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi1g02007 WRKY 1.6e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02007 - - pvu:PHAVU_003G192000g 618.616