Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vivi1g02007 | ATGGAGAGTGATTCTGGAAGATCTGGTGATGGAGATGGTGGAGTTCTCAAAGAAGAGAAGAGAAGTGATGATGAGACTCATCATCATCAAAAGGAGGAGACTATTGTTGAGGAACCACCCATTGCTAGTACTGAAAAATCAATTGAGACTAGACCAATCACATCCTCTCCCAAAAATACTAAGGTTGATGATCAGCTTGAGACAACAAAGGCTCAAATGTGTGAAGTGAGAGAAGAAAATCAACGGTTAAAAACGCGTCTCAGCAAAATAATGACCGAATATCGAGCACTAGAAATGCAATTTCACAGCATGGTTAATAAGCAAGAAACAAAAAAGAACAATGTTGATCACAATGATAATAACCATGATGAAATAATGGCGGAATCAGATCTTGTTTCCCTTAGCCTTGGAAGAGCTCCTAGTAACAACATTCCGAAAAATGAAGAGAAAATGAACAAAGTCTCTAAGCTAGCATTGAACAATGATGATGAAGAATTTAAACAAGAGTTGACTCTTGGATTGGATTGTAAATTCGAAACATCGAAATCAGGTAGCACAACTGAAGGATTGCCAAATCAAAATCCAAGTCCAGTGAATAGTTGTGAAGTGGTTCCAACGAAGGATGAAGAAACCGGGGTAACTTGGCCGCCAAGTAAGACACCGATCAATAATAAGACGGTGAGAGATGCAGCTGAGGATGAAGTTTCTCAGCAAACTCCAGCAAAGAAAGCTAGAGTTTGTGTTAGAGCAAGATGTGACACACCAACGATGAATGATGGATGCCAATGGAGGAAATATGGACAAAAGATTGCAAAAGGAAATCCTTGCCCTAGGGCTTACTACCGTTGCACAGTTGCACCATCATGTCCAGTTAGAAAACAGGTGCAAAGATGTGTTGATGACATGTCTATTTTAATCACAACCTATGAAGGAACACACAACCACACTCTTCCACTTTCAGCCACAGCAATGGCATCCACAACTTCCGCCGCCGCATCCATGCTACTATCAGGCTCATCAACTTCCCACCCCGGTTCAATCCCCTCAACACAAACCAACAACAATCTCCATGGCCTAAACTTCTACCTACCCGACGGTTCAAAGTCGAATCAACTATACCTATCCAACCCTGCACTATCATCTCAACATTCCCATCCAACTATCACTCTTGACCTCACCACAAACCCATCATCAAACCCTTCATCCTCATCACCCTTTGTTAGATTCAACTCAAACTACAACAACAACAACCAGTTACCAAGATACTCTTCTTCCACAAGCCTCAGCTTTAGTTCTCCTGAATCCAACACAATGCATTGGAATAGCTTCCTCAATTATGCTACCACTCAGAATCAACAACCATATCATAACAACAGAAACCCTAATATTAATAATCTCAACACTCTAAACTTTGGTAGACAACAAAACACAATGGAAAGTATATACCAAACCTACATGCAAAAAAACAATGGTTTACCTTCAGATAGTACTATAACTGCAGCAACAAAAGCCATCACAGCAGATCCAACTTTTCAATCAGCTTTAGCTGCAGCACTTACAACACTTATTGGAAACAACACTCGAACTCAACAAGGTAATCATCAAAATCAAAGTGTAGGAGAAAATTTGAGTCAGAAAATGAAATGGGCTGAGATGTTTCCGGTGTCTTCAAGTTCATTGCCTTCATCAAGTTCTAAAGTAATTGGTTGTGCTTCGAGTTTCTTGAACAAAACCGCGCCAGTGAACTCACAGACAGGAAGCTTGATGTCACTGTCGCCTTCTTTGCCATTTGCTACAGCCAAAAGTGCTTCTGCATCTCCTCCTGGGAATACTAGTGATAACTCCAATTAG | 1851 | 0.4073 | MESDSGRSGDGDGGVLKEEKRSDDETHHHQKEETIVEEPPIASTEKSIETRPITSSPKNTKVDDQLETTKAQMCEVREENQRLKTRLSKIMTEYRALEMQFHSMVNKQETKKNNVDHNDNNHDEIMAESDLVSLSLGRAPSNNIPKNEEKMNKVSKLALNNDDEEFKQELTLGLDCKFETSKSGSTTEGLPNQNPSPVNSCEVVPTKDEETGVTWPPSKTPINNKTVRDAAEDEVSQQTPAKKARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPSCPVRKQVQRCVDDMSILITTYEGTHNHTLPLSATAMASTTSAAASMLLSGSSTSHPGSIPSTQTNNNLHGLNFYLPDGSKSNQLYLSNPALSSQHSHPTITLDLTTNPSSNPSSSSPFVRFNSNYNNNNQLPRYSSSTSLSFSSPESNTMHWNSFLNYATTQNQQPYHNNRNPNINNLNTLNFGRQQNTMESIYQTYMQKNNGLPSDSTITAATKAITADPTFQSALAAALTTLIGNNTRTQQGNHQNQSVGENLSQKMKWAEMFPVSSSSLPSSSSKVIGCASSFLNKTAPVNSQTGSLMSLSPSLPFATAKSASASPPGNTSDNSN | 616 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vivi1g02007 | 616 | SUPERFAMILY | WRKY DNA-binding domain | 250 | 318 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Vivi1g02007 | 616 | PANTHER | WRKY TRANSCRIPTION FACTOR 36-RELATED | 35 | 536 | IPR044810 | GO:0003700 | |
Vivi1g02007 | 616 | MobiDBLite | consensus disorder prediction | 47 | 62 | - | - | |
Vivi1g02007 | 616 | MobiDBLite | consensus disorder prediction | 377 | 412 | - | - | |
Vivi1g02007 | 616 | Pfam | WRKY DNA -binding domain | 258 | 315 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vivi1g02007 | 616 | MobiDBLite | consensus disorder prediction | 1 | 64 | - | - | |
Vivi1g02007 | 616 | Coils | Coil | 80 | 100 | - | - | |
Vivi1g02007 | 616 | MobiDBLite | consensus disorder prediction | 181 | 200 | - | - | |
Vivi1g02007 | 616 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
Vivi1g02007 | 616 | FunFam | probable WRKY transcription factor 31 | 242 | 319 | - | - | |
Vivi1g02007 | 616 | SMART | WRKY_cls | 257 | 317 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vivi1g02007 | 616 | ProSiteProfiles | WRKY domain profile. | 252 | 318 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vivi1g02007 | 616 | Gene3D | WRKY domain | 241 | 319 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vivi1g02007 | Vivi-Chr1 | 42375777 | 42379283 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vivi1g02007 | 73 | 545 | WRKY Transcription Factor Family | AT5G15130 | 42.222 | 1.58e-83 | 269 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | WRKY | Vivi1g02007 | WRKY | 1.6e-23 | CL0274 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vivi1g02007 | - | - | pvu:PHAVU_003G192000g | 618.616 |