Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02006 ATGGAGAGTGATTCTGGAAGATCTGGTGATGGAGATGGTGGAGTTCTCAAAGAAGAGAAGAGAAGTGATGATGAGACTCATCATCATCAAAAGGAGGAGACTATTGTTGAGGTTGATGATCAGCTTGAGACAACAAAGGCTCAAATGTGTGAAGTGAGAGAAGAAAATCAACGGTTAAAAACGCGTCTCAGCAAAATAATGACCGAATATCGAGCACTAGAAATGCAATTTCACAGCATGGTTAATAAGCAAGAAACAAAAAAGAACAATGTTGATCACAATGATAATAACCATGATGAAATAATGGCGGAATCAGATCTTGTTTCCCTTAGCCTTGGAAGAGCTCCTAGTAACAACATTCCGAAAAATGAAGAGAAAATGAACAAAGTCTCTAAGCTAGCATTGAACAATGATGATGAAGAATTTAAACAAGAGTTGACTCTTGGATTGGATTGTAAATTCGAAACATCGAAATCAGGTAGCACAACTGAAGGATTGCCAAATCAAAATCCAAGTCCAGTGAATAGTTGTGAAGTGGTTCCAACGAAGGATGAAGAAACCGGGGTAACTTGGCCGCCAAGTAAGACACCGATCAATAATAAGACGGTGAGAGATGCAGCTGAGGATGAAGTTTCTCAGCAAACTCCAGCAAAGAAAGCTAGAGTTTGTGTTAGAGCAAGATGTGACACACCAACGATGAATGATGGATGCCAATGGAGGAAATATGGACAAAAGATTGCAAAAGGAAATCCTTGCCCTAGGGCTTACTACCGTTGCACAGTTGCACCATCATGTCCAGTTAGAAAACAGGTGCAAAGATGTGTTGATGACATGTCTATTTTAATCACAACCTATGAAGGAACACACAACCACACTCTTCCACTTTCAGCCACAGCAATGGCATCCACAACTTCCGCCGCCGCATCCATGCTACTATCAGGCTCATCAACTTCCCACCCCGGTTCAATCCCCTCAACACAAACCAACAACAATCTCCATGGCCTAAACTTCTACCTACCCGACGGTTCAAAGTCGAATCAACTATACCTATCCAACCCTGCACTATCATCTCAACATTCCCATCCAACTATCACTCTTGACCTCACCACAAACCCATCATCAAACCCTTCATCCTCATCACCCTTTGTTAGATTCAACTCAAACTACAACAACAACAACCAGTTACCAAGATACTCTTCTTCCACAAGCCTCAGCTTTAGTTCTCCTGAATCCAACACAATGCATTGGAATAGCTTCCTCAATTATGCTACCACTCAGAATCAACAACCATATCATAACAACAGAAACCCTAATATTAATAATCTCAACACTCTAAACTTTGGTAGACAACAAAACACAATGGAAAGTATATACCAAACCTACATGCAAAAAAACAATGGTTTACCTTCAGATAGTACTATAACTGCAGCAACAAAAGCCATCACAGCAGATCCAACTTTTCAATCAGCTTTAGCTGCAGCACTTACAACACTTATTGGAAACAACACTCGAACTCAACAAGGTAATCATCAAAATCAAAGTGTAGGAGAAAATTTGAGTCAGAAAATGAAATGGGCTGAGATGTTTCCGGTGTCTTCAAGTTCATTGCCTTCATCAAGTTCTAAAGTAATTGGTTGTGCTTCGAGTTTCTTGAACAAAACCGCGCCAGTGAACTCACAGACAGGAAGCTTGATGTCACTGTCGCCTTCTTTGCCATTTGCTACAGCCAAAAGTGCTTCTGCATCTCCTCCTGGGAATACTAGTGATAACTCCAATTAG 1779 0.4081 MESDSGRSGDGDGGVLKEEKRSDDETHHHQKEETIVEVDDQLETTKAQMCEVREENQRLKTRLSKIMTEYRALEMQFHSMVNKQETKKNNVDHNDNNHDEIMAESDLVSLSLGRAPSNNIPKNEEKMNKVSKLALNNDDEEFKQELTLGLDCKFETSKSGSTTEGLPNQNPSPVNSCEVVPTKDEETGVTWPPSKTPINNKTVRDAAEDEVSQQTPAKKARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPSCPVRKQVQRCVDDMSILITTYEGTHNHTLPLSATAMASTTSAAASMLLSGSSTSHPGSIPSTQTNNNLHGLNFYLPDGSKSNQLYLSNPALSSQHSHPTITLDLTTNPSSNPSSSSPFVRFNSNYNNNNQLPRYSSSTSLSFSSPESNTMHWNSFLNYATTQNQQPYHNNRNPNINNLNTLNFGRQQNTMESIYQTYMQKNNGLPSDSTITAATKAITADPTFQSALAAALTTLIGNNTRTQQGNHQNQSVGENLSQKMKWAEMFPVSSSSLPSSSSKVIGCASSFLNKTAPVNSQTGSLMSLSPSLPFATAKSASASPPGNTSDNSN 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02006 592 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 23 512 IPR044810 GO:0003700
Vivi1g02006 592 SMART WRKY_cls 233 293 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi1g02006 592 MobiDBLite consensus disorder prediction 353 388 - -
Vivi1g02006 592 Pfam WRKY DNA -binding domain 234 291 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi1g02006 592 MobiDBLite consensus disorder prediction 1 38 - -
Vivi1g02006 592 SUPERFAMILY WRKY DNA-binding domain 226 294 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi1g02006 592 MobiDBLite consensus disorder prediction 157 176 - -
Vivi1g02006 592 FunFam probable WRKY transcription factor 31 218 295 - -
Vivi1g02006 592 ProSiteProfiles WRKY domain profile. 228 294 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi1g02006 592 Gene3D WRKY domain 217 295 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi1g02006 592 Coils Coil 56 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02006 Vivi-Chr1 42375774 42379285 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02006 49 521 WRKY Transcription Factor Family AT5G15130 42.222 7.37e-84 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi1g02006 WRKY 1.5e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02006 - - pvu:PHAVU_003G192000g 591.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g00226 6 5282223 5284942 Vivi1g02006 1 42375774 42379285 ECH
Vivi1g02006 1 42375774 42379285 Vivi1g02006 1 42375774 42379285 ECH