Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01997 ATGGGTAAATCGCCTGGAAAATGGATCAAAACGGTACTGTTTGGGAAGAAGTCGTCCAAATCAAATATACCAAGAGGAAGAGAGAAGCTTGTTAATCAAAAAGAAGGAGTTGTTACTTCCAAGGTTTCAGAAACTGGTTTGGCTTTAGAGCCAACTGTCAATACTATTCCCAGACACGAGGAAGAGCTGGAGCTGGAGAGTAGAGAAGCAGAAAATGTTTTGCCTGGGAATCAAGAAATTGACACAGTGGGACCTGTACATCAAGATGCACCACTTGATCCAGAAATATTGAGGCAGGAGGAAGCAGTTACGAAAGCACAAGCTGCTTTCAGGGGTTATTTGGCTCGGCGAGCATTTAGAGCCCTTAAAGGCATAATAAGGTTGCAAGCACTTATTCGTGGGCACCTGGTAAGAAGACAAGCTGTTGTTACATTATGCTGTATGTATGGAATTGTCAAATTACAAGGACTTGTTCGTGGACAAAAAGTTAGACAGTCTGATGTTGGATTTGAAATTCATGAGAAGTTCAATCTATTAAAGCTTCAGGATGACAAACCTGTCAAGCTTATTGCTATATCTGATAAAATTCTGAAGCTGTCAGCCAATAATTTCATCCGAAAGCTTATTGCTTCTTCTACTACAATAATGGCCCTGCGTTTGCAATATGTCCGCGGTGATCCAAATTCAGTCCTAAGTTGGTTGGAGCGCTGGTCAGCATCTTGGTTTTGGAGGCCAATTCCCCAGCCCAAGAAAATCCGGGATACTAAGTCCCAGAAAAAGCAGGGTAATATTGCAACTGGTGATGCTCAAACAAGCAAGTCAAAACGGACCCACAGGAAGCTTTCTACTTCAAATTTTGATCCAGCCCCAGGACAAGCCAATCCTGAATTTGAAAAACCAAAACGAAATGTAAGGAAATTTCCAAGCCAGCCTTCTGATCCTGTGCTGGAAAATCCCCAAATTGAGCTTGAGAAGATTAAGCGAAACTTGAGAAAGGTTCATAACCCAGTTGTTGAGACTTCAGTTCTGTCAGAAGTTGAATCTGAGACTCAGAAGCCATATCTGGAAAAAGAAACAGTTGCCTCAAATGTTGTTGTTTCAGAACAAGCAGTCACCAGTTCTAATGAAAGAATCAAGAAGGAAGCAACAAAAATCATTTCCAGTGAGCCGGATATCGGAATTACTGCTGGAGACTTAATTAATAAGGAGGTGTTTGACACTCCAACCAGTTATCAGGTGAATGTAGAATCAAAGCCCTTGACAGATATTACAAGTAAAGATAAAAACGTTTCTGATGATGACATTAAAAATGAGTCCATAGATTTAGTAGAGACTAGCAAAGATGAAAATTCTCACTTAACCAATGGTGGTTTGAGTCACAAGGAAGATCAAACAGGCAGTGAAAATCAGAAACCAATCCGAAAAGCCTCAATTGTAGCTAAGCAGGAACGTGCAGAGAACGGTTCGCATAATAGTCCGACAGTACCGAGTTATATGGCAGCAACTGAATCTGCCAAAGCAAAATTGAGGGCTCAAGGATCCCCCAAAATTGGACAAGATGGAAGTGAGAAAATCAACAATGCTCGGCGACATTCTCTTCCATCTTTATCTAACAGCAAAATCAGTTCGCATTCACCTAGGACACAGAGGCCAGTTCATTCAGGTGGTAAAGGGGCCCACAAAAGTGACAAAGCTGTATCTTCTGTGGTTGGAAATGGAAAGGTAGTTCAAGCAGAATGGAAGAGATAA 1749 0.4145 MGKSPGKWIKTVLFGKKSSKSNIPRGREKLVNQKEGVVTSKVSETGLALEPTVNTIPRHEEELELESREAENVLPGNQEIDTVGPVHQDAPLDPEILRQEEAVTKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVVTLCCMYGIVKLQGLVRGQKVRQSDVGFEIHEKFNLLKLQDDKPVKLIAISDKILKLSANNFIRKLIASSTTIMALRLQYVRGDPNSVLSWLERWSASWFWRPIPQPKKIRDTKSQKKQGNIATGDAQTSKSKRTHRKLSTSNFDPAPGQANPEFEKPKRNVRKFPSQPSDPVLENPQIELEKIKRNLRKVHNPVVETSVLSEVESETQKPYLEKETVASNVVVSEQAVTSSNERIKKEATKIISSEPDIGITAGDLINKEVFDTPTSYQVNVESKPLTDITSKDKNVSDDDIKNESIDLVETSKDENSHLTNGGLSHKEDQTGSENQKPIRKASIVAKQERAENGSHNSPTVPSYMAATESAKAKLRAQGSPKIGQDGSEKINNARRHSLPSLSNSKISSHSPRTQRPVHSGGKGAHKSDKAVSSVVGNGKVVQAEWKR 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01997 582 ProSiteProfiles IQ motif profile. 99 127 IPR000048 GO:0005515
Vivi1g01997 582 MobiDBLite consensus disorder prediction 252 316 - -
Vivi1g01997 582 Pfam Protein of unknown function (DUF4005) 482 562 IPR025064 -
Vivi1g01997 582 MobiDBLite consensus disorder prediction 528 550 - -
Vivi1g01997 582 MobiDBLite consensus disorder prediction 421 448 - -
Vivi1g01997 582 Pfam IQ calmodulin-binding motif 123 140 IPR000048 GO:0005515
Vivi1g01997 582 Pfam IQ calmodulin-binding motif 101 120 IPR000048 GO:0005515
Vivi1g01997 582 ProSiteProfiles IQ motif profile. 123 145 IPR000048 GO:0005515
Vivi1g01997 582 SMART iq_5 121 142 IPR000048 GO:0005515
Vivi1g01997 582 SMART iq_5 98 120 IPR000048 GO:0005515
Vivi1g01997 582 MobiDBLite consensus disorder prediction 484 499 - -
Vivi1g01997 582 MobiDBLite consensus disorder prediction 410 582 - -
Vivi1g01997 582 PANTHER IQ-DOMAIN 5-RELATED 1 539 - -
Vivi1g01997 582 MobiDBLite consensus disorder prediction 449 463 - -
Vivi1g01997 582 Gene3D - 98 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01997 Vivi-Chr1 42229394 42235817 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01997 1 582 IQD Protein Family AT1G74690 44.643 1.18e-127 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01997 - - gmx:100794636 815.068