Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01994 ATGGGTAAATCGCCTGGAAAATGGATCAAAACGGTACTGTTTGGGAAGAAGTCGTCCAAATCAAATATACCAAGAGGAAGAGAGCTTGTTAATCAAAAAGAAGGAGTTGTTACTTCCAAGGTTTCAGAAACTGGTTTGGCTTTAGAGCCAACTGTCAATACTATTCCCAGACACGAGGAAGAGCTGGAGCTGGAGAGTAGAGAAGCAGAAAATGTTTTGCCTGGGAATCAAGAAATTGACACAGTGGGACCTGTACATCAAGATGCACCACTTGATCCAGAAATATTGAGGCAGGAGGAAGCAGTTACGAAAGCACAAGCTGCTTTCAGGGGTTATTTGGCTCGGCGAGCATTTAGAGCCCTTAAAGGCATAATAAGGTTGCAAGCACTTATTCGTGGGCACCTGGTAAGAAGACAAGCTGTTGTTACATTATGCTGTATGTATGGAATTGTCAAATTACAAGGACTTGTTCGTGGACAAAAAGTTAGACAGTCTGATGTTGGATTTGAAATTCATGAGAAGTTCAATCTATTAAAGCTTCAGGATGACAAACCTGTCAAGCTTATTGCTATATCTGATAAAATTCTGAAGCTGTCAGCCAATAATTTCATCCGAAAGCTTATTGCTTCTTCTACTACAATAATGGCCCTGCGTTTGCAATATGTCCGCGGTGATCCAAATTCAGTCCTAAGTTGGTTGGAGCGCTGGTCAGCATCTTGGTTTTGGAGGCCAATTCCCCAGCCCAAGAAAATCCGGGATACTAAGTCCCAGAAAAAGCAGGGTAATATTGCAACTGGTGATGCTCAAACAAGCAAGTCAAAACGGACCCACAGGAAGCTTTCTACTTCAAATTTTGATCCAGCCCCAGGACAAGCCAATCCTGAATTTGAAAAACCAAAACGAAATGTAAGGAAATTTCCAAGCCAGCCTTCTGATCCTGTGCTGGAAAATCCCCAAATTGAGCTTGAGAAGATTAAGCGAAACTTGAGAAAGGTTCATAACCCAGTTGTTGAGACTTCAGTTCTGTCAGAAGTTGAATCTGAGACTCAGAAGCCATATCTGGAAAAAGAAACAGTTGCCTCAAATGTTGTTGTTTCAGAACAAGCAGTCACCAGTTCTAATGAAAGAATCAAGAAGGAAGCAACAAAAATCATTTCCAGTGAGCCGGATATCGGAATTACTGCTGGAGACTTAATTAATAAGGAGGTGTTTGACACTCCAACCAGTTATCAGGTGAATGTAGAATCAAAGCCCTTGACAGATATTACAAGTAAAGATAAAAACGTTTCTGATGATGACATTAAAAATGAGTCCATAGATTTAGTAGAGACTAGCAAAGATGAAAATTCTCACTTAACCAATGGTGGTTTGAGTCACAAGGAAGATCAAACAGGCAGTGAAAATCAGAAACCAATCCGAAAAGCCTCAATTGTAGCTAAGCAGGAACGTGCAGAGAACGGTTCGCATAATAGTCCGACAGTACCGAGTTATATGGCAGCAACTGAATCTGCCAAAGCAAAATTGAGGGCTCAAGGATCCCCCAAAATTGGACAAGATGGAAGTGAGAAAATCAACAATGCTCGGCGACATTCTCTTCCATCTTTATCTAACAGCAAAATCAGTTCGCATTCACCTAGGACACAGAGGCCAGTTCATTCAGGTGGTAAAGGGGCCCACAAAAGTGACAAAGCTGTATCTTCTGTGGTTGGAAATGGAAAGGTAGTTCAAGCAGAATGGAAGAGATAA 1746 0.4147 MGKSPGKWIKTVLFGKKSSKSNIPRGRELVNQKEGVVTSKVSETGLALEPTVNTIPRHEEELELESREAENVLPGNQEIDTVGPVHQDAPLDPEILRQEEAVTKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVVTLCCMYGIVKLQGLVRGQKVRQSDVGFEIHEKFNLLKLQDDKPVKLIAISDKILKLSANNFIRKLIASSTTIMALRLQYVRGDPNSVLSWLERWSASWFWRPIPQPKKIRDTKSQKKQGNIATGDAQTSKSKRTHRKLSTSNFDPAPGQANPEFEKPKRNVRKFPSQPSDPVLENPQIELEKIKRNLRKVHNPVVETSVLSEVESETQKPYLEKETVASNVVVSEQAVTSSNERIKKEATKIISSEPDIGITAGDLINKEVFDTPTSYQVNVESKPLTDITSKDKNVSDDDIKNESIDLVETSKDENSHLTNGGLSHKEDQTGSENQKPIRKASIVAKQERAENGSHNSPTVPSYMAATESAKAKLRAQGSPKIGQDGSEKINNARRHSLPSLSNSKISSHSPRTQRPVHSGGKGAHKSDKAVSSVVGNGKVVQAEWKR 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01994 581 ProSiteProfiles IQ motif profile. 122 144 IPR000048 GO:0005515
Vivi1g01994 581 MobiDBLite consensus disorder prediction 420 447 - -
Vivi1g01994 581 MobiDBLite consensus disorder prediction 251 315 - -
Vivi1g01994 581 ProSiteProfiles IQ motif profile. 98 126 IPR000048 GO:0005515
Vivi1g01994 581 Pfam IQ calmodulin-binding motif 100 119 IPR000048 GO:0005515
Vivi1g01994 581 Pfam IQ calmodulin-binding motif 122 139 IPR000048 GO:0005515
Vivi1g01994 581 MobiDBLite consensus disorder prediction 409 581 - -
Vivi1g01994 581 MobiDBLite consensus disorder prediction 448 462 - -
Vivi1g01994 581 MobiDBLite consensus disorder prediction 527 549 - -
Vivi1g01994 581 Pfam Protein of unknown function (DUF4005) 481 561 IPR025064 -
Vivi1g01994 581 Gene3D - 97 145 - -
Vivi1g01994 581 MobiDBLite consensus disorder prediction 483 498 - -
Vivi1g01994 581 PANTHER IQ-DOMAIN 5-RELATED 1 538 - -
Vivi1g01994 581 SMART iq_5 120 141 IPR000048 GO:0005515
Vivi1g01994 581 SMART iq_5 97 119 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01994 Vivi-Chr1 42229394 42235850 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01994 1 581 IQD Protein Family AT1G74690 44.643 7.66e-126 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01994 - - gmx:100794636 808.52