Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01991 ATGGTTAATCCTTCTAGCTTCTGCACTCAAACAAACGCGCTTCTCAGGAAGAACTTAACCTTCCAGAAACGCAACGTGAAAACCAACCTTCGCCTGATTCTATTCCCATTGATCCTTTGCATCTTGCTTGTTCTTATTCAAAGCTTAATTGACTCTCAATTCGAGAAGCCTGAATTCAAATGCGGTTGCGCCTGTCCCGATAAAAGAACAACATGTAACAATTCGGAGAAGGTTTGCGGGGCTCAGTATTCCAAACGGATTCAAACTTTAGACTGTGCAATTCCTAAGCCACCGGAATGGCCTCCCATTTTGCAACTTCCTTCGGCCTTTTGCAACGATACTAGAACCGGCACCTGTCCTGTTAAAGTGCTTTTCACTGCCAAAAATCAATCCTTTGGACAGATTGTGTCTGACAATATGTTCCCAAGTGCTCTCACTGTGAATGACTCTGATATCATGGCTAGTTTGGCATGGAATGTGGTGGGATCTGAAGTTAATCCTGACGACACCTATTTTGCTGAACCTGCTTTTACTTCGGGTTTTCCCCTTTATTATGTACAAAATGAATGTCCGGAGGACAACTCTGGACTCACATTTCCCAACCATATAGAAGGCACAACTTCGGATAAAGATGTAGAAATCAAATGTGCCCAAGGTACAAGTTTTTGGCGTAAAAGCTCTTCTGATATCAACAATGAGTTATATAAGTCTTATCAAAGAAATAAGACTGGACGGGTCGATGACGTAACTTCAGCTTTTGATTTTCTTGATTCAAATGAGGATGGATTCAATATCACTGTCTGGTACAGGTCATACTTGAAGGATAGCACTGGTTCTCCTCCACTGTTGCGGATTCCCCGTTCTGTAAATCTTATATCAAATGCCTACCTGCAGTTTCTGCGTGGACCGGGGACCAAAATGTTATTTGAGTTTGTGAAGGAAATGCCAAAATTTTCCACCCCAGTTAGGATTGAGGTAGCTTCTCTCCTGGGCGGTCTGTTCTTTACATGGGTTGTCCTGCAACTTTTTCCGGTTGTTCTGACATCAATGGTTTATGAGAAGGAACAAAAACTAAGAATCATGATGAAAATGCATGGTCTTGGCGATGGACCGTATTGGATAATTTCATATGGTTATTTTCTTGCAATATCAGTGACCTACATGTTGTGTTTTGTGATATTCGGCTCAGTCTTAGGACTAAAATTCTTCTACTTGAATGACTACAGCATCCAATTCGTGTTTTATTTCATCTATATAAACTTACAAATTTCTCTGGCATTTTTGTTGTCTTCATTTTTTTCAAATGTTAGGACTGCTACAGTGACATCATATATAGCTGTCTTTGGAACTGGGTTATTAGGCGGCTTTCTTTTCCAAAATTTTCTAGATTCATCATTTCCAAGAGGATGGATCATTTGTATGGAGTTGTATCCTGGCTTTGCTTTATATCGTGGGTTGTACGAGTTTGCACAGTCTGCCAACAATGCTGCTAATTCAGGGGCTTCTGGTATGCAGTGGCAGGATCTAAGTGATAGCTCCAATGGCATGAAAGAGGTCTTAATTATCATGTTTGTTGAGTGGAAACTAGTGCTTTTTGTTGCTTATTACGTCGATCAAGTATTGTCGACAGGAGGTGGAAAAAGTCCACTTTTCTTCTTGAAAAGATTTCAGAAAAAACCTCTTACGTTAATCAGTAAGCTCGGTATTCAAAGGCAGGGGTCAAATGTTTTGGCTCAGATGGAGAAACCAGATGTCATCCAAGAGAGGGAGAAGGTGGAGCAGCTACTACTTGAACCAACCGTTAATCATGCAATTGTTTGCGATGACCTTAAAAAATTCTATCCAGGAAGGGATGGAAATCCAGGGAAATTCGCAGTGAAAGAATTGTTCCTTGCTGTGCCTCGAGGGGAATGCTTCGGTATGCTAGGTCCTAATGGTGCAGGGAAGACTTCTTTCATTAGTATGATGATTGGTCTCACAAAGCCGACATCTGGTGCCGCATATGTTCAAGGCCTAGACATAAGAGCTCATATGGATGAAATATATACTAGCATGGGAGTATGCCCACAGCATGACTTGCTATGGGAAAGCTTGACCGGTAGAGAGCACCTACTATTTTATGGTAGACTAAAAAATCTTAAAGGTTCCGTCTTGACTCAAGCAGTAGAAGAATCTTTGAAGAGTTTAAACCTTTTCCATGGAGGGGTTGCTGATAAACAAGCTGGAAAGTACAGTGGAGGGATGAAGAGGAGGCTTAGTGTTGCAATTTCATTGATTGGAGACCCTAAAGTTGTTTATATGGATGAACCAAGTACCGGATTAGACCCTGCTTCAAGGAAATGCCTATGGAATGTTATTAAGCTTGCAAAAAGAGACCGTGCAATCATTCTCACTACACATTCTATGGAAGAGGCAGAGGCCTTATGTGATCGATTAGGAATTTTCGTAGATGGTAGCTTGCAGTGCATAGGAAATCCAAAGGAGCTGAAAGGCAGATATGGAGGAACTTATGTGTTCACAATGACAACATCTTCCGATCACGAGAAGGATGTGGAGAACATGGTACGACGGCTCACCCCAAATGCCAACAAGATATACTGTCTCTCTGGTACCCAGAAATTTGAGCTACCAAAAGAGGATGTTAAGATTGCCAATGTATTCCAAGCAGTTGAACATGCAAAAAGAAGGTTTACTGTTTTTGCATGGGGTTTAGCAGACACCACATTAGAAGATGTCTTTATTAAGGTTGCACGCGAGGCTCAGGCATTTGATACCTTATTATAG 2784 0.4134 MVNPSSFCTQTNALLRKNLTFQKRNVKTNLRLILFPLILCILLVLIQSLIDSQFEKPEFKCGCACPDKRTTCNNSEKVCGAQYSKRIQTLDCAIPKPPEWPPILQLPSAFCNDTRTGTCPVKVLFTAKNQSFGQIVSDNMFPSALTVNDSDIMASLAWNVVGSEVNPDDTYFAEPAFTSGFPLYYVQNECPEDNSGLTFPNHIEGTTSDKDVEIKCAQGTSFWRKSSSDINNELYKSYQRNKTGRVDDVTSAFDFLDSNEDGFNITVWYRSYLKDSTGSPPLLRIPRSVNLISNAYLQFLRGPGTKMLFEFVKEMPKFSTPVRIEVASLLGGLFFTWVVLQLFPVVLTSMVYEKEQKLRIMMKMHGLGDGPYWIISYGYFLAISVTYMLCFVIFGSVLGLKFFYLNDYSIQFVFYFIYINLQISLAFLLSSFFSNVRTATVTSYIAVFGTGLLGGFLFQNFLDSSFPRGWIICMELYPGFALYRGLYEFAQSANNAANSGASGMQWQDLSDSSNGMKEVLIIMFVEWKLVLFVAYYVDQVLSTGGGKSPLFFLKRFQKKPLTLISKLGIQRQGSNVLAQMEKPDVIQEREKVEQLLLEPTVNHAIVCDDLKKFYPGRDGNPGKFAVKELFLAVPRGECFGMLGPNGAGKTSFISMMIGLTKPTSGAAYVQGLDIRAHMDEIYTSMGVCPQHDLLWESLTGREHLLFYGRLKNLKGSVLTQAVEESLKSLNLFHGGVADKQAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRKCLWNVIKLAKRDRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKGRYGGTYVFTMTTSSDHEKDVENMVRRLTPNANKIYCLSGTQKFELPKEDVKIANVFQAVEHAKRRFTVFAWGLADTTLEDVFIKVAREAQAFDTLL 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01991 927 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 605 842 IPR003439 GO:0005524
Vivi1g01991 927 CDD ABC_subfamily_A 609 830 - -
Vivi1g01991 927 FunFam ABC transporter A family member 7 594 870 - -
Vivi1g01991 927 SMART AAA_5 635 818 IPR003593 GO:0016887
Vivi1g01991 927 Pfam ABC-2 family transporter protein 322 499 IPR013525 GO:0016020|GO:0140359
Vivi1g01991 927 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 604 833 IPR027417 -
Vivi1g01991 927 Gene3D - 597 867 IPR027417 -
Vivi1g01991 927 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 577 921 IPR026082 GO:0016020|GO:0055085|GO:0140359
Vivi1g01991 927 ProSitePatterns ABC transporters family signature. 744 758 IPR017871 GO:0005524|GO:0016887
Vivi1g01991 927 Pfam ABC transporter 628 771 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01991 Vivi-Chr1 42073435 42081033 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01991 614 853 Calmodulin-binding Proteins AT2G36910 23.482 4.68e-12 68.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01991 1 42073435 42081033 Vivi1g01991 1 42073435 42081033 ECH