Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01990 ATGGCAATTCCTTCCACCTTCTCGACTCAAGCAAACGCGCTTCTCAGAAAGAACTTAACCTTCCAGAAACGCAACAAGAAGACAAACATTCGTCTGATTCTATTCCCGTTCATGCTCTGCGTTTTTCTGTTTCTCCTCCAACCTTTAATCGACAAACAATTCGATAAACCCCAATTCAAATGCGGTTGCGTTTGTACCAACGATGGCGCAACGTGTAACGACTCAGAGAAGCTTTGTGGAGTCGAGTATTCTGATCAGATACAAGTTTTAGCTTGTGCTGTTCCTAATCCACCGGAATGGCCTCCTCTCTTGCAACTTCCGGCCGGAAAGGCGTGGTATCCGCCTGTTTATACCATGCTCTTCACAGCTGAGAATCACTCCTTTGGACAGATTGTGTCTGATAATATGTTTCCGAGTACATTAACTATGGATTACTCTGATATCATGGCTAGTTTGGCATCAAATATGCTGGGATCTGAGGCGAAGCCGGAGAGCAACAATTTTCTTGAACCTGCATTCACTTCGGATCTTCCCCTTTATTATGTGCAAACTAAGTGCCCTCAGGACGGCCTTATATTCACACCAATTTACTCGATAGGAGGAACTGATGCGCAGCAGTATATGGAAACATTTCCATACATGATAGCAGACTTTCACATGAATAAAGAAATTGGATGTGCTGACGGTATAAACTTATGGCGTACCAGTTCTTCCGAGATCAACAATGAGTTATATGAAGGTCATGAAAGAAATTACCCAGAGCGGGTCAATGCAATATTTTCAGCTTTTGATTTTCTAAATTCAAATGGGAATGGATTCAATGTTACTGTATGGTACAAGTCAACCTACAAGGGTCTCACTAATTTTGGTCCTCCTGCATTGTTGCGAATTCCTCGTTCTGTAAATTTGGTATCAAATGCCTACCTGCAATTTCTGCGTGGACCTGGTACCAAAATGTTATTTGAGTTTGTAAAGGAAATGCCAAAATCTGAGACCCCAATTAGGATTGAGGTAGCTTCTCTCCTCGGCGGTCTGTTCTTTACATGGGTCGTCCTGCAACTCTTTCCAATTGTTCTGACATCTCTGGTTTATGAGAAGCAACAAAAATTAAGAATCATGATGAAAATGCATGGTCTTGGTGATGGGCCATATTGGATGATTACATATGGTTATTTTCTTGCCTTATCAGTGATCTACATGTTGTGTTTTGTGACATTTGGCTCAGTATTAGGACTAAAATTCTTTACCTTGAATGACTACAGCATCCAATTCGTGTTTTATTTCATCTATATAAACTTACAAATTTCATTGGCATTTCTGTTGGCTTCCTTTTTCTCAAGTGTTAAGACTGCTACAGTAACCGCGTATATAGGTGTCTTTGGAACCGGGCTATTATCCGGGTTTCTTTTTCAATTCTTTATTCAAGATTCCTCATTTCCTAGAGGATGGATCATTTTTATGGAGTTGTATCCCGGGTTTGCTTTATATCGTGGGTTGTATGAGTTTGCACAGTCTGCCATCAGTGGCAGTAATGTAGGGACTGATGGTATGCGGTGGCATGATCTGAGTGATAACGCCAATGGCATGAAAGAGGTCTTAATAATCATGTTTTCTGAGTGGATAGTAGTGCTTTTTGTTGCTTATTACATCGATCAAGTGTTTTCGACAGGAAGTGGAAAAAGTCCACTTTTCTTCTTGAAAGGATTTCAGAAAAAACCTCTTTCGCCAGGTAAGACGCTCAGTATTCAGAGGCAGGCATCAAAAGTTTTGGCGGTGGTGGAGAAACCAGATGTCATCCAAGAGAGGGAAAAGGTGGAGCAGCTGCTACTTGAACCAACCATTGATCATGCAATTGTTTGTGACAACCTAAAAAAAGTATATCCAGGAAGAGATGGAAATCCAGAGAAATTTGCAGTGAGAGAATTGTCCCTTGCTGTGCCTAGAGGGGAATGCTTCGGTATGCTTGGTCCTAATGGGGCTGGGAAGACTTCTTTTATCAGTATGATGATTGGTCTCACTAAGCCAACATCTGGTGCGGCATATGTTCAAGGCCTGGACATAAAAACTCACATGGATGGAATATATACTAGCATGGGAGTTTGCCCACAGCATGACTTGCTGTGGGAAAGCTTGACAGGTAGAGAGCACCTACTTTTTTATGGCCGGCTTAAAAATCTTAAAGGTCCAGTCTTGACTCAAGCAGTAGAAGAATCTTTGAAGAGTTTAAACCTTTTTCATGGAGGGGTTGCTGATAAACAAGCTGGAAAGTACAGTGGAGGGATGAAAAGGAGGCTTAGTGTTGCAATTTCAATGATTGGGGACCCCAAAGTTGTTTATATGGATGAGCCGGGTACTGGACTAGACCCTGCTACAAGGAAATGCCTATGGAATGTTATCAGGCTTGCGAAACGGGATCGTGCAATCATTCTGACCACACATTCTATGGAAGAGGCAGAGGCGTTATGTGATCGATTAGGAATATTTGTAAATGGTAGCTTGCAGTGCATTGGAAATCCAAAAGAGCTGAAAGCGAGATACGGAGGAATCTATGTGTTCACAATGACAACATCTTCCGATCACGAGAAGGATGTGGAGAACATTGTGCAACAGCTCACCCCAAATGCCAACAAGATATACCATATCTCTGGCACTCAAAAATTTGAGCTTCCAAAAGAGGATGTTAAAATAGCGAATGTATTCCAAGCTGTTGAAGTTGCAAAAAAGAACTTCACTGTTTTTGCATGGGGTTTAGCTGACACTACATTAGAAGATGTCTTTATTAAGGTTGCACGTGAGGCTCATGCATTTGATACCTTATCATAA 2823 0.4159 MAIPSTFSTQANALLRKNLTFQKRNKKTNIRLILFPFMLCVFLFLLQPLIDKQFDKPQFKCGCVCTNDGATCNDSEKLCGVEYSDQIQVLACAVPNPPEWPPLLQLPAGKAWYPPVYTMLFTAENHSFGQIVSDNMFPSTLTMDYSDIMASLASNMLGSEAKPESNNFLEPAFTSDLPLYYVQTKCPQDGLIFTPIYSIGGTDAQQYMETFPYMIADFHMNKEIGCADGINLWRTSSSEINNELYEGHERNYPERVNAIFSAFDFLNSNGNGFNVTVWYKSTYKGLTNFGPPALLRIPRSVNLVSNAYLQFLRGPGTKMLFEFVKEMPKSETPIRIEVASLLGGLFFTWVVLQLFPIVLTSLVYEKQQKLRIMMKMHGLGDGPYWMITYGYFLALSVIYMLCFVTFGSVLGLKFFTLNDYSIQFVFYFIYINLQISLAFLLASFFSSVKTATVTAYIGVFGTGLLSGFLFQFFIQDSSFPRGWIIFMELYPGFALYRGLYEFAQSAISGSNVGTDGMRWHDLSDNANGMKEVLIIMFSEWIVVLFVAYYIDQVFSTGSGKSPLFFLKGFQKKPLSPGKTLSIQRQASKVLAVVEKPDVIQEREKVEQLLLEPTIDHAIVCDNLKKVYPGRDGNPEKFAVRELSLAVPRGECFGMLGPNGAGKTSFISMMIGLTKPTSGAAYVQGLDIKTHMDGIYTSMGVCPQHDLLWESLTGREHLLFYGRLKNLKGPVLTQAVEESLKSLNLFHGGVADKQAGKYSGGMKRRLSVAISMIGDPKVVYMDEPGTGLDPATRKCLWNVIRLAKRDRAIILTTHSMEEAEALCDRLGIFVNGSLQCIGNPKELKARYGGIYVFTMTTSSDHEKDVENIVQQLTPNANKIYHISGTQKFELPKEDVKIANVFQAVEVAKKNFTVFAWGLADTTLEDVFIKVAREAHAFDTLS 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01990 940 FunFam ABC transporter A family member 7 607 883 - -
Vivi1g01990 940 ProSitePatterns ABC transporters family signature. 757 771 IPR017871 GO:0005524|GO:0016887
Vivi1g01990 940 SMART AAA_5 648 832 IPR003593 GO:0016887
Vivi1g01990 940 Pfam ABC-2 family transporter protein 338 548 IPR013525 GO:0016020|GO:0140359
Vivi1g01990 940 Pfam ABC transporter 640 783 IPR003439 GO:0005524
Vivi1g01990 940 Gene3D - 610 885 IPR027417 -
Vivi1g01990 940 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 618 855 IPR003439 GO:0005524
Vivi1g01990 940 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 581 934 IPR026082 GO:0016020|GO:0055085|GO:0140359
Vivi1g01990 940 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 608 856 IPR027417 -
Vivi1g01990 940 CDD ABC_subfamily_A 622 843 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01990 Vivi-Chr1 42061170 42067686 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01990 622 866 Calmodulin-binding Proteins AT2G36910 24.419 2.92e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01990 - - tpra:123887097 1565.82