Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01988 ATGGGAAATTGCTTTGGAAGTCGTTCCAAGGTTGATGTCCCTCTCACCTCCCAACCCAATTCTGCTCCTCTTAGAAGCACTCAATTGTTAGTTAAATCAAGTGGTGCAGCAGTACATGGAAACAGTGAAGGAGGTAAACCTGAGATTCTAGTTCTACCAACTCCGAGATCGGAAGGGGACATACTTTCTTCTCCTCATTTAAAAGCCTTCACATTTAAGGATCTTAGGAATGCAACTAAAAACTTCAGTAATGATAGTTTAATCGGACAAGGAGGATTCGGTTATGTTTATAAAGGCTGGATTGACGATCGATCGCGTAAAGCTGCAAAGCCTGCTGCTGGAACTGCTGTTGCTGTCAAGAAGCTTAAGCCGGAAGGTTTTCAAGGCCATAAGGAGTGGCTGTCTGAACTCAATTATCTTGGCCAACTTCATCATCCAAATCTTGTCAAACTTACTGGATATTGCCTAGATGGAGATAACAGGCTTCTGGTCTATGAGTTCATGCCTAATGGAAGCTTGGAAGATCATCTATTTCGCAAAGGAGCACAACTACTTCCTTGGGCAACAAGAATCAAAGTAGCAACTGGTGCTGCTCGAGGTCTCACTTTTCTACACGACTCTAATCAACAAATTATCTACCGTGATTTCAAGGCTTCTAATATTTTATTAGACTCGGAATTTAATGCGAAACTCTCAGACTTTGGATTGGCCAAAGCAGGGCCTACTGGCGATCGTTCTCATGTTTCTACTCAAGTTCTGGGAACTCAAGGCTATGCTGCTCCTGAATATATTGCTACAGGTCGGCTAACAACAAGGTGCGATGTCTATAGCTTTGGAGTTGTGCTATTAGAACTACTATCAGGGCGAAATGCGGTCGATAAAACAAAATCAGGAGTGGAACATAATCTGGTAGATTGGGCGCGGCCATATTTAGGCGATAGAAGGAAATTGTTTCGGATTATGGACACAAGATTAGAAGGGCAGTATCCACAAAGGGCAGCTTATACAGCTGCAATTCTTGCATTACAGTGTATTAGTGAGGCCAAGTTTAGACCACAAATGTCTGAGGTTTTGGCAACGTTGGAACAATTGCCTGTCATCAGACATTCAGCTAGTCCTTCTAGATTAGAGGTGAAACCAATCTCAAGTCCAATAAGAGAGAGAGAGTATGAAGCAAAAACTAGTGAAATACTCGTGCGTACGTACAAACAGATGTAA 1218 0.4245 MGNCFGSRSKVDVPLTSQPNSAPLRSTQLLVKSSGAAVHGNSEGGKPEILVLPTPRSEGDILSSPHLKAFTFKDLRNATKNFSNDSLIGQGGFGYVYKGWIDDRSRKAAKPAAGTAVAVKKLKPEGFQGHKEWLSELNYLGQLHHPNLVKLTGYCLDGDNRLLVYEFMPNGSLEDHLFRKGAQLLPWATRIKVATGAARGLTFLHDSNQQIIYRDFKASNILLDSEFNAKLSDFGLAKAGPTGDRSHVSTQVLGTQGYAAPEYIATGRLTTRCDVYSFGVVLLELLSGRNAVDKTKSGVEHNLVDWARPYLGDRRKLFRIMDTRLEGQYPQRAAYTAAILALQCISEAKFRPQMSEVLATLEQLPVIRHSASPSRLEVKPISSPIREREYEAKTSEILVRTYKQM 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01988 405 ProSitePatterns Protein kinases ATP-binding region signature. 88 121 IPR017441 GO:0005524
Vivi1g01988 405 Gene3D Transferase(Phosphotransferase) domain 1 168 374 - -
Vivi1g01988 405 FunFam Serine/threonine-protein kinase BIK1 52 167 - -
Vivi1g01988 405 Gene3D Phosphorylase Kinase; domain 1 63 167 - -
Vivi1g01988 405 CDD STKc_IRAK 88 364 - -
Vivi1g01988 405 Pfam Protein tyrosine and serine/threonine kinase 86 301 IPR001245 GO:0004672|GO:0006468
Vivi1g01988 405 ProSiteProfiles Protein kinase domain profile. 82 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g01988 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Vivi1g01988 405 MobiDBLite consensus disorder prediction 1 22 - -
Vivi1g01988 405 PANTHER OS01G0588500 PROTEIN-RELATED 44 364 - -
Vivi1g01988 405 SUPERFAMILY Protein kinase-like (PK-like) 60 362 IPR011009 -
Vivi1g01988 405 FunFam Serine/threonine-protein kinase PBS1 168 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01988 Vivi-Chr1 42049027 42051989 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01988 68 361 Glycoside Hydrolase AT3G07070 53.020 1.14e-103 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vivi1g01988 PK_Tyr_Ser-Thr 1.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01988 - - gmx:100791844 585.874