Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01982 ATGGGATCAGAGAGTATTGCTCCGATGGCTGAGACATCAAAAAACAGGTCTTCTCCTTGTAAAATGAACCAAGGGAAAGTCCCCAAGAGAATTCACAAGGCTGAAAGAGAGAAAATGAAACGTGAACACTTGAACGAACTCTTTCTTGATCTTGCCAATGCTCTTGATCTCAATGATCCAAACAGTGGAAAGGCTTCTATATTGTCTGAAGCTTCTAAGCTGCTAAAGGACTTGCTCTGTCAGATTCAGTCTCTCAAGAAGGAGAACGTCACTTTGTTGTCTGAATCTCAATATGTGAGTGTGGAGAAAAATGAACTGAAGGAAGAGAATAGTAGCCTAGAAACTCAAATCGAGAAGCTTCAAGGAGAGATAAAGGCAAGGATAGCTCATTCTAAACCTGACCTGAATGCACCTCCTCAAATGGAGCTTGAGCTGCCAGAGCAGACAAAATTTGCAGGATATGGTCTCCAAATGCCTACCGTAGAACCTTCATTGCAGCAAGGACCTACTGTTGTGGTTGTTCCTTTTCGTCCTGATCTTCAAGCTGCTTTTCCAGCCCCTAACGTTACGGATCTCATGCCAAACCCTACACCTGTCATCAGTAAACCACATGCTAGATATCCCACACCAGCAGATTCGTGGCCATTGCAACTGCTTGGAGAGCAACCAACTTCTAATTAA 681 0.4361 MGSESIAPMAETSKNRSSPCKMNQGKVPKRIHKAEREKMKREHLNELFLDLANALDLNDPNSGKASILSEASKLLKDLLCQIQSLKKENVTLLSESQYVSVEKNELKEENSSLETQIEKLQGEIKARIAHSKPDLNAPPQMELELPEQTKFAGYGLQMPTVEPSLQQGPTVVVVPFRPDLQAAFPAPNVTDLMPNPTPVISKPHARYPTPADSWPLQLLGEQPTSN 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01982 226 Coils Coil 103 123 - -
Vivi1g01982 226 Coils Coil 68 95 - -
Vivi1g01982 226 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 28 78 IPR011598 GO:0046983
Vivi1g01982 226 MobiDBLite consensus disorder prediction 1 22 - -
Vivi1g01982 226 MobiDBLite consensus disorder prediction 200 226 - -
Vivi1g01982 226 MobiDBLite consensus disorder prediction 1 29 - -
Vivi1g01982 226 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 26 93 IPR036638 GO:0046983
Vivi1g01982 226 Gene3D - 25 103 IPR036638 GO:0046983
Vivi1g01982 226 PANTHER TRANSCRIPTION FACTOR BHLH47 9 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01982 Vivi-Chr1 41930308 41932492 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01982 15 222 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47640 46.930 1.22e-58 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01982 - - psat:127073805 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01982 1 41930308 41932492 Vivi1g01982 1 41930308 41932492 ECH