Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01980 ATGGAGGGAGGAGATGATCTCCACCACCATCATCACCACCATCAACACCAACACCACCATCACCACCAACAACAACAACAACAGCGTCAGAATCAGAACTTCCCATTCCAGCTTCTTGAGAAGAAAGAAGACCAACAAGAAGCAGCTTCATGTTCAACTTCTTCACCATATCCATCCTTAGCAATCTCACCTACAGAACCGAGTACATCAAATTCAAACCGATCCAACCAACTAGTACCAGCCGCAGCAGTACCAACAACCTCCGACCCCGGAAGCAAAAAACCTCCTCCCAAAAGAACCTCCACCAAAGACCGTCACACCAAAGTAGAAGGCCGCGGCCGCCGCATCCGAATGCCTGCACTCTGCGCTGCTAGAGTTTTCCAACTAACACGCGAACTCGGCCATAAATCCGACGGCGAAACCATCGAATGGCTTCTCCAACAGGCCGAACCCGCTGTTATAGCCGCAACTGGTACCGGAACTATTCCTGCTAACTTCACCTCTCTCAACATCTCGCTTCGTAGCTCAGGCTCCTCCATGTCTGTTCCATCTCAGCTAAGATCTTCTTACTTCAACCCGAACTTCTCACTTCAGCAACGCAGAACTCTTTTCCCTGGAATCGGTTTATCTTCTTCAGATAACAGTAGCAACAACAACAACAACACTTCAATGCTTTTGAATTTCCAATCAAATAACCTAACGAACATGTTGCAGGCAAAACAAGAGCTTCGAGACGGAAACGCAAACACAAACTCAAACGCGCCTTCTTCATCGACCACGTTGGATTTATCAGAAACAAGCGGAGAAGATCAATCTATGGGAGGAAGAAAAAGAAGACCTAGCAGCGAGCAAGATTTATCGTCAATACAGCATCAAATGGGGAGTTATCTGCTGCAGTCAAGTGCAGGTTCGATTCCGGCCAGTCATACTCAGATGCCGGCGAATATATGGATGGTAGCTAACTCCAATAACCAAATAATGAGCGGCGGTGATCCTATATGGACTTTTCCGTCGGTGAATAATAGTGCTGCTGCTTTATATAGAGGAGCAGTTTCAACCAGTGGTTTACATTTTATGAATTTTCCACAACCTATGGCTTTGTTACCAGGTCAGCAATTAGGTAATTCATCCATTGGCAGCGGAGGAGGCGGCGGTGGTGGTGGAAGTAGTGGAGGAGGAGGTGGTGGAAATATCAATATGAATATGAACATGAATGAAGGACATTTGAGTATGCTCGCCGGTCTGAGTCCTTATCGTCCGGTTTCAGATCATCAATCTCATCAACAACAGCAACATCAACAACAACCAAGTGGATCACAATCACATCATCGCGGAGGTAGCCACGACGATCGACATGATAATTAA 1365 0.4652 MEGGDDLHHHHHHHQHQHHHHHQQQQQQRQNQNFPFQLLEKKEDQQEAASCSTSSPYPSLAISPTEPSTSNSNRSNQLVPAAAVPTTSDPGSKKPPPKRTSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSYFNPNFSLQQRRTLFPGIGLSSSDNSSNNNNNTSMLLNFQSNNLTNMLQAKQELRDGNANTNSNAPSSSTTLDLSETSGEDQSMGGRKRRPSSEQDLSSIQHQMGSYLLQSSAGSIPASHTQMPANIWMVANSNNQIMSGGDPIWTFPSVNNSAAALYRGAVSTSGLHFMNFPQPMALLPGQQLGNSSIGSGGGGGGGGSSGGGGGGNINMNMNMNEGHLSMLAGLSPYRPVSDHQSHQQQQHQQQPSGSQSHHRGGSHDDRHDN 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01980 454 ProSiteProfiles TCP domain profile. 102 156 IPR017887 -
Vivi1g01980 454 Pfam TCP family transcription factor 100 244 IPR017887 -
Vivi1g01980 454 MobiDBLite consensus disorder prediction 414 454 - -
Vivi1g01980 454 MobiDBLite consensus disorder prediction 1 111 - -
Vivi1g01980 454 MobiDBLite consensus disorder prediction 421 442 - -
Vivi1g01980 454 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 16 439 IPR005333 GO:0003700
Vivi1g01980 454 MobiDBLite consensus disorder prediction 246 270 - -
Vivi1g01980 454 MobiDBLite consensus disorder prediction 96 111 - -
Vivi1g01980 454 MobiDBLite consensus disorder prediction 370 402 - -
Vivi1g01980 454 MobiDBLite consensus disorder prediction 246 289 - -
Vivi1g01980 454 MobiDBLite consensus disorder prediction 48 83 - -
Vivi1g01980 454 MobiDBLite consensus disorder prediction 10 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01980 Vivi-Chr1 41840594 41842635 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01980 92 394 TCP Transcription Factor Family AT3G47620 46.631 4.81e-66 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vivi1g01980 TCP 2.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01980 - - vvo:131635423 689.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01980 1 41840594 41842635 Vivi1g01980 1 41840594 41842635 ECH
Vivi2g01937 2 90925450 90928173 Vivi1g01980 1 41840594 41842635 PCT