Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01963 ATGGAAATGGCGAATTCATGTCAGGATTGCTCAATGCTCCACTCTTCCAATGTAGCTTCCGTTTCTGATGAAGAGGAACAACCTCAACCCATTCTTACTCGTGCCACTGAACTCACCATTTCCTTTCAAGGCCACGTCTATGTTTTCCCTTCCGTTACGCCACAAAAGGTTCAGGCTGTACTGTTACTCTTAGAAGGGCATGAAACACCCAATACTGTCCCCACCTCTCACTTTTTGGTGCACCAAAACTATCAGGACATTTGGGGAATAAATGATACTTCGCGTAATTCAAAGCATTCGCGGAGATTTGCGTCACTGATTAGGTTCCGTGAGAAACGAAAAGATAGATGTTTTGAGAAGAAAATTCGGTATACTTGCCGTAAAGAGGTTGCTGCAAGGATGTTACGGAAGAATGGGCAGTTTACATCATTGAAGGAAGAGTACGGTTCTCATGCTGAAAACCAGGATTCTAACAATGGTACACCTTGTGCAAAATCTACTGAGCATAGATGTCAGCATTGTGGAATTGGTGAGAAGTCTACTCCAGTAATGCGTCGAGGACCATCTGGTCCAAGATCTCTATGCAATGCTTGTGGGCTCATGTGGGCAAATAAGGGAACTCTGAGAGATCTCCACAAATCAGGAAGGATTGCTTTTGAACAGAATGAACTGGATACTTCAGCTGCAGAGCCAGAAAATTCATGTGCTGCGCAGGACAAGGAGCCCCGGGAAGCAAAGCCCGTGTCAATGGATGCCATACAGTCACCTGAGATGATAGACGAACAGTATGTGCTCGAATCTGCTGAAGCAGTTATTGACAACTTGTCCATCCAAGTGGAGAACAATGCTCTTGATCTGCATGAGCAGGACAAAACTATGGAGGATCTTGCTGATGCTTCTGGGATCGAATTTGAGATCCCTGCAGGTTTTGATTATCAGGTTGATATTGATGATCCCAACATGAGGACTTACTGGCTGTGA 981 0.4485 MEMANSCQDCSMLHSSNVASVSDEEEQPQPILTRATELTISFQGHVYVFPSVTPQKVQAVLLLLEGHETPNTVPTSHFLVHQNYQDIWGINDTSRNSKHSRRFASLIRFREKRKDRCFEKKIRYTCRKEVAARMLRKNGQFTSLKEEYGSHAENQDSNNGTPCAKSTEHRCQHCGIGEKSTPVMRRGPSGPRSLCNACGLMWANKGTLRDLHKSGRIAFEQNELDTSAAEPENSCAAQDKEPREAKPVSMDAIQSPEMIDEQYVLESAEAVIDNLSIQVENNALDLHEQDKTMEDLADASGIEFEIPAGFDYQVDIDDPNMRTYWL 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01963 326 Pfam tify domain 36 64 IPR010399 -
Vivi1g01963 326 Pfam CCT motif 102 143 IPR010402 GO:0005515
Vivi1g01963 326 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 166 218 - -
Vivi1g01963 326 ProSiteProfiles Tify domain profile. 31 66 IPR010399 -
Vivi1g01963 326 SMART GATA_3 165 218 IPR000679 GO:0006355|GO:0043565
Vivi1g01963 326 Pfam GATA zinc finger 171 207 IPR000679 GO:0006355|GO:0043565
Vivi1g01963 326 ProSitePatterns GATA-type zinc finger domain. 171 198 IPR000679 GO:0006355|GO:0043565
Vivi1g01963 326 MobiDBLite consensus disorder prediction 222 249 - -
Vivi1g01963 326 ProSiteProfiles CCT domain profile. 102 144 IPR010402 GO:0005515
Vivi1g01963 326 CDD ZnF_GATA 170 213 IPR000679 GO:0006355|GO:0043565
Vivi1g01963 326 SMART tify_2 31 66 IPR010399 -
Vivi1g01963 326 Gene3D - 163 223 IPR013088 GO:0006355|GO:0008270
Vivi1g01963 326 PANTHER GATA TRANSCRIPTION FACTOR 28 8 305 IPR045280 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01963 Vivi-Chr1 41573386 41576458 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01963 37 214 Tify Gene Family AT1G51600 56.757 1.80e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vivi1g01963 CCT 2.3e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01963 - - mtr:11405700 478.789