Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01952 ATGGCTTCTTCATGGTTTATCAAACTTGCTTTCAAATGCCTTCATCATATAGCATGGCCTCTTTTTGCTCTGGTGTTTCCTATGTGTGCTTCCATTCAAGCAATCGAGACTGATTCCAATGCAGAAACTAAGAATTTAATCTCATATTGGATACTTCTTTCGTTAATATATCTCTTCGAGTATGCTTTTATCAAGCTTCTTCTTTGGTTTCACCTCTGGCAGTACATTAAGCTAATGATCATTTTCTGGCTCGTGACGCCAGACTTTGGACGAGCTTATTATGTTTATAATAGCCTTATTCGCTCGATGAAACCTCAAATAGTCACATGCTGGAGGAAGTGTTTTCCTGAGAGTGATAACTTTTTAGTGCATGGAGAGAGGTATGTGAAAGAGAATGGAACTGAAGCCTTAGAGAAACTCATTACTAGCAAGACAAATGGAGAAAGAGTTCAAATTGAGCAGAAAGACATCAAAGATTTGGAGGCTATTGAGAAAAAAGAAATTCTTGTGCAGACAAATGGAGAAATACAGACAGAGAACAAAGACATCAAATATTTGGAGGCTGTTGAGAAAAAAGAAACTTCTGTGCAGGCAAACGAACAAATACAGACAGAGAACAAAGACATCAAAGATTTGGAGGCTACTGAGAAAACAGAAATTCCTGCAGCCAAACAAATAACATATGCTAATATTGTGGCAAGTCAAAAAGCGTCACCAGTCATAGTAGAAACCAAAAGAACAGCAGAAAGTGGGATAGCTGGTGGAGAGGCGGTTCAGAGTTTGATTTGCATAGAGAAGGAAGTGCAGAGAGAGTGGACATGTGCTTTATGCTTGGTTAAAGTTACCTGCGAGAAAACCCTGAATTCCCACCTTAAGGGGAAGAAACACAGGGCTGCTTGTGAAGAAGCTTTGAAATTGAAGATGCCATCTAGTCTGCCGAAGAAGCTGACAGAACCAATAAGGATTGTTAATTCCAAAATAATATGTAAAGCGTGTAATGTTATGCTTCCAAGTGACGACTGTGTGGTATCTCACATAAAAGGGTGGAAGCACATGTCTAATCTTCAGATCAAATCTAAGAGTACGAAATATGCTCGAGGTCAAAATCTTGTGTCCTCAGCTGGAGTGAAGTTTCATTTGTTCTGCTTGTCTTCCCGTGCGATGCTTAACATTGAGACTTTATCGTGGTTCCATGTCGGTTGTGCAGCTTGCTTACTTGGTTCCCTAGTTGGTAGCTTCGTCTTCTTACTTTCCTTCCATCTCCCAACTAAACTAGTACTACTTGATTATTTTATTTACTCACCACGACCGACTTTTGATTTTCCTTTTACATCATCGTCCTATTTATGCTCATGCAACAAACAACCATTGACACCTTTAGTTTCCTCTATGGCTTCTTCATGGTTTCTCAAATTGGCTTTTAAATTCCTTCATCATTTCGCATGGCCTCTTGTTGCTCTGCTGTATCCTATGTGTGCTTCCATACAAGCAATTGAGACTGATTCCTATGCGGAAACTAAGAATTTGATCTCATATTGGATACTTCTTTCATTTATTTATCTTTTTGAGTATGCTTTTATCAACCTTCTACCATGGTTTCAGCTATGGTTGTACATCAAGCTAATGATAATATTCTGGCTCACCATACCAGACTTTGGACGAGCTTCTTATGTTTATAATAACGTTATTCTCTCCATGAAACTGCAAATAGTCACTTGGAGGTTAAGTAACTACCGGACGAAGTGGTTATTTGAGAAAGATAACTTTTTAATGCGCGCAGAGATATATATGAACGAGAATGGAACTGAAGCATTAGAGAAACTCATTGTTAGCAAGAATACAATGTGTATACCTCATATAGAAGGGACTAATGATATCCTAGCTACGGATAATAAAGAAACATCGAAGACAAATGTAGAAAGAGTGGAAACAAACATTAAAGATTTGGAGGCTATAGTTAAAAAAGAAATTCCTGCAAACCAGCGAGATATTTCTGTTATATCTGAAACTGTGCCAAGTCAAAATGCATCAACAGCCACAGTAGAAAACAAAGTAACCACCGAGAATAACATAGCTGGTGGAGAAGTTCCTCAGAGTTCTACTTCTACGCAGAAGGAAGTGCAGAAAGAGTGGAATTGTGCTTTATGTTCGGTGACAACATCGAACGAGATAACCTTGAATTCACACCTAAGTGGAAGGAAACACAGGGCTGCTATTAAAACTTTTATAGCAAAGAAGCTACCTACGTTGCAGAAGCTAAACTATGCAGAAGCCACAAATGAAATCACTGCTACCGAGAGTAAAGAAACACTAAAGACAAATGGAAAAAGACTCCAACCAGAACAGACAGAAATCAAAGATTTGGACGCTATTGCAAAAGAAATTCCTGCAACCAAGCAAAGAACCAGTGCTACTACGGCAAGTCAAAAGGCATCGTTTGCCATAATAGAAACCAAAGGAACATTGGAGAGAGACACAGCTGGTGGAGAGGTTTCTCAGAGTTCTACTTCTACACAGAAGGAAGTGCAGAAAGAGTGGGCTTGTGCGTTATGTTTGGTAACAACATCGAGCGAGACAACCTTAAATTCGCATCTTAGTGGAAGGAAACACATGAATACTATTGAGGCATTGAAAGCAAAGAAGCAACCCACCCAAGCAAAAAAGCAACCTACCCTGGAAAAGAACCTCTGTGAACCATTTAGGATGGTTAATTCGAAAATAATATGTAAAGTTTGTAATATTATGCTACCAAGTGAGGAGTACATGGCCTCTCACATAAAAGGGTGGAAGCACTTGTCTAAGATTCAAAGTTGA 2814 0.3898 MASSWFIKLAFKCLHHIAWPLFALVFPMCASIQAIETDSNAETKNLISYWILLSLIYLFEYAFIKLLLWFHLWQYIKLMIIFWLVTPDFGRAYYVYNSLIRSMKPQIVTCWRKCFPESDNFLVHGERYVKENGTEALEKLITSKTNGERVQIEQKDIKDLEAIEKKEILVQTNGEIQTENKDIKYLEAVEKKETSVQANEQIQTENKDIKDLEATEKTEIPAAKQITYANIVASQKASPVIVETKRTAESGIAGGEAVQSLICIEKEVQREWTCALCLVKVTCEKTLNSHLKGKKHRAACEEALKLKMPSSLPKKLTEPIRIVNSKIICKACNVMLPSDDCVVSHIKGWKHMSNLQIKSKSTKYARGQNLVSSAGVKFHLFCLSSRAMLNIETLSWFHVGCAACLLGSLVGSFVFLLSFHLPTKLVLLDYFIYSPRPTFDFPFTSSSYLCSCNKQPLTPLVSSMASSWFLKLAFKFLHHFAWPLVALLYPMCASIQAIETDSYAETKNLISYWILLSFIYLFEYAFINLLPWFQLWLYIKLMIIFWLTIPDFGRASYVYNNVILSMKLQIVTWRLSNYRTKWLFEKDNFLMRAEIYMNENGTEALEKLIVSKNTMCIPHIEGTNDILATDNKETSKTNVERVETNIKDLEAIVKKEIPANQRDISVISETVPSQNASTATVENKVTTENNIAGGEVPQSSTSTQKEVQKEWNCALCSVTTSNEITLNSHLSGRKHRAAIKTFIAKKLPTLQKLNYAEATNEITATESKETLKTNGKRLQPEQTEIKDLDAIAKEIPATKQRTSATTASQKASFAIIETKGTLERDTAGGEVSQSSTSTQKEVQKEWACALCLVTTSSETTLNSHLSGRKHMNTIEALKAKKQPTQAKKQPTLEKNLCEPFRMVNSKIICKVCNIMLPSEEYMASHIKGWKHLSKIQS 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01952 937 Coils Coil 632 652 - -
Vivi1g01952 937 Gene3D Classic Zinc Finger 258 302 - -
Vivi1g01952 937 Gene3D Classic Zinc Finger 878 937 - -
Vivi1g01952 937 Gene3D Classic Zinc Finger 692 741 - -
Vivi1g01952 937 Gene3D Classic Zinc Finger 829 876 - -
Vivi1g01952 937 SMART c2h2final6 907 931 IPR013087 -
Vivi1g01952 937 SMART c2h2final6 846 870 IPR013087 -
Vivi1g01952 937 SMART c2h2final6 711 735 IPR013087 -
Vivi1g01952 937 SMART c2h2final6 327 351 IPR013087 -
Vivi1g01952 937 SMART c2h2final6 272 296 IPR013087 -
Vivi1g01952 937 Pfam Zinc-finger of C2H2 type 711 735 - -
Vivi1g01952 937 Pfam Zinc-finger of C2H2 type 272 296 - -
Vivi1g01952 937 Pfam Zinc-finger of C2H2 type 846 870 - -
Vivi1g01952 937 Pfam Zinc-finger of C2H2 type 908 931 - -
Vivi1g01952 937 Pfam TB2/DP1, HVA22 family 27 102 IPR004345 -
Vivi1g01952 937 Pfam TB2/DP1, HVA22 family 490 563 IPR004345 -
Vivi1g01952 937 SUPERFAMILY beta-beta-alpha zinc fingers 899 936 IPR036236 -
Vivi1g01952 937 SUPERFAMILY beta-beta-alpha zinc fingers 252 303 IPR036236 -
Vivi1g01952 937 PANTHER HVA22-LIKE PROTEINS 20 122 IPR004345 -
Vivi1g01952 937 SUPERFAMILY beta-beta-alpha zinc fingers 693 744 IPR036236 -
Vivi1g01952 937 Coils Coil 195 215 - -
Vivi1g01952 937 SMART ZnF_U1_5 904 937 IPR003604 GO:0003676|GO:0008270
Vivi1g01952 937 SMART ZnF_U1_5 708 742 IPR003604 GO:0003676|GO:0008270
Vivi1g01952 937 SMART ZnF_U1_5 843 877 IPR003604 GO:0003676|GO:0008270
Vivi1g01952 937 SMART ZnF_U1_5 324 358 IPR003604 GO:0003676|GO:0008270
Vivi1g01952 937 SMART ZnF_U1_5 269 303 IPR003604 GO:0003676|GO:0008270
Vivi1g01952 937 SUPERFAMILY beta-beta-alpha zinc fingers 829 882 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01952 Vivi-Chr1 41457737 41464512 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01952 846 936 C2H2 Transcription Factor Family AT2G19380 27.000 3.60e-07 52.0