Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01944 ATGGACGAAAGAGGATATGATGCTGAAGTGAGTTACAATTCGAGTTCAAACAACATTACTGTCACCTTCACAGGTTATCAAGATAACAATATAATCCAACAGCACTTGTCAAGTGTTGTTAACCTGAAAGATAACCTACCTGATTGGGTTGAATTCGGATTCACTTCAGCAACAGGTTTCTGGTGGGAGTATCATACTCTTAACTCATGGTCTTTCAAGTCAAGTTCAGATTTTGAAGTTGACAAGAACGGAACAAACACGGGACTTGTTATAGGACTTAGTGTTATCGGTGGTGCTTCTGTTTTTATTTGTGTTATCGTGTTGGTTTGTTTTGTGAAACGGAAGCTGAGGAATAACAGAATGGAGGATGTTTTGCAGACCGATCTCGAAATGGATAATGATTTTGAAAGAAGCTCTCTACCTAGGAAGTTTACCTTTGAAGAACTTGCTATAGCAACCAACAACTTTGCAAAGGAACACAAAATCGGAGAAGGTGGTTTCGGAGGAGTCTACAAGGGATTCATAAAAGACTTAAAAACTCATGTTGCAATTAAGAAAGTTTCTAAGGGATCAAATCAAGGAGTGAAGGAATATGCATCTGAGGTCAAAGTTATTAGCCAATTGAGGCAAAAGAATTTGGTTCAACTCTTTGGTTGGTGTCACAAACAAAATGATCTTCTATTAGTTTACGAGTTCATGGAAAACGGAAGCTTAGATTCTTATCTTTTCAAAGGTAAAGGCTTGTTGACATGGCCCGTGCGATACAACATAGCTAGAGGCTTAGCCTCAGCATTATTGTACCTACATGAAGAATGTGAAAAGTGTGTACTTCATAGAGACATAAAATCAAGCAACATCATGTTGGATAGTAATTTCAACACAAAGCTTGGAGATTTCGGTTTGGCGAGACTAATGAACCATGAGACAGAATCAAAGACAACAGTTCTAGCAGGAACATACGGATATCTTTCACCTGAGGCTGCAACTAGAGGTAAAGCTAGTAGAGAATCTGATGTATATAGTTTTGGAGTAGTTGCTTTGGAGATAGCTTGTGGTAGGAAAGCAATTGAGCCAGGTCTTAGTGAAGGACATGTTTACTTGGTGGATTGGGTTTGGGAGCTTTATGGTGTAGGTGAAATTGTTAAAGCAGGTGATTCAAGATTGTATGGTGAGTTCAATGCGAAGGAGGTTGAGAGGTTGATGATTGTTGGACTTTGGTGTACTCATATAGATCATGTTCAGAGGCCTATGATTAGACAAGTTGTTCAGGTTCTGAATTTTGATGCTCCTTTGCCTACTCTTCCATTACAGATGCATTCATCTTTCAATTCTGTGTCCTCTAAATTCAAGACTAGTGGTTTTGAAAATAACAAAAGTGGGATCTCAACTTCAAGCAATAGTACCTTCACAGGGTCATCACAATCAAGCACAGCATTTGAAGTTGTTTCTCCTTCAGCTGCTCTTCTAAATACATACAACACCATTTGA 1488 0.3871 MDERGYDAEVSYNSSSNNITVTFTGYQDNNIIQQHLSSVVNLKDNLPDWVEFGFTSATGFWWEYHTLNSWSFKSSSDFEVDKNGTNTGLVIGLSVIGGASVFICVIVLVCFVKRKLRNNRMEDVLQTDLEMDNDFERSSLPRKFTFEELAIATNNFAKEHKIGEGGFGGVYKGFIKDLKTHVAIKKVSKGSNQGVKEYASEVKVISQLRQKNLVQLFGWCHKQNDLLLVYEFMENGSLDSYLFKGKGLLTWPVRYNIARGLASALLYLHEECEKCVLHRDIKSSNIMLDSNFNTKLGDFGLARLMNHETESKTTVLAGTYGYLSPEAATRGKASRESDVYSFGVVALEIACGRKAIEPGLSEGHVYLVDWVWELYGVGEIVKAGDSRLYGEFNAKEVERLMIVGLWCTHIDHVQRPMIRQVVQVLNFDAPLPTLPLQMHSSFNSVSSKFKTSGFENNKSGISTSSNSTFTGSSQSSTAFEVVSPSAALLNTYNTI 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01944 495 Gene3D Transferase(Phosphotransferase) domain 1 233 445 - -
Vivi1g01944 495 SMART serkin_6 156 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g01944 495 FunFam L-type lectin-domain containing receptor kinase IX.1 141 232 - -
Vivi1g01944 495 ProSiteProfiles Protein kinase domain profile. 156 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g01944 495 Pfam Protein kinase domain 157 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g01944 495 FunFam Lectin-domain containing receptor kinase A4.3 233 444 - -
Vivi1g01944 495 Gene3D Phosphorylase Kinase; domain 1 141 232 - -
Vivi1g01944 495 Pfam Legume lectin domain 4 79 IPR001220 GO:0030246
Vivi1g01944 495 ProSitePatterns Protein kinases ATP-binding region signature. 162 186 IPR017441 GO:0005524
Vivi1g01944 495 ProSitePatterns Legume lectins alpha-chain signature. 46 55 IPR000985 -
Vivi1g01944 495 PANTHER - 9 440 - -
Vivi1g01944 495 Gene3D - 1 89 - -
Vivi1g01944 495 SUPERFAMILY Protein kinase-like (PK-like) 139 445 IPR011009 -
Vivi1g01944 495 ProSitePatterns Serine/Threonine protein kinases active-site signature. 276 288 IPR008271 GO:0004672|GO:0006468
Vivi1g01944 495 CDD STKc_IRAK 162 426 - -
Vivi1g01944 495 SUPERFAMILY Concanavalin A-like lectins/glucanases 6 176 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01944 Vivi-Chr1 41400411 41402762 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01944 10 438 Receptor kinase-like Gene Family AT5G10530 49.885 3.95e-144 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vivi1g01944 Pkinase 2.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01944 - - vvo:131635277 959.903