Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01917 ATGGAAAACATTTCAGTGTTCCCATCTAAGGAAGATGAAAAGATGGATTTGCCTCCTGGATTTCGGTTCCACCCAACTGATGAAGAGCTTATCAGTCATTACCTTTACAAAAAGGTTATTGATTCGAGTTTCTCCGCGAAAGCTATCGGAGATGTAGACCTCAACAAGTCTGAACCTTGGGATTTACCATGGAAAGCTAAAATGGGAGAAAAAGAATGGTACTTTTTCTGTGTGAGAGACAGAAAATACCCAACTGGTTTGAGGACAAACAGAGCAACAGAAGCAGGTTACTGGAAAGCAACTGGGAAAGATAAAGAGATTTTCAAAGGGAAATCTTTGGTTGGTATGAAGAAAACTCTTGTTTTTTACAAAGGAAGAGCACCAAAAGGCGAAAAAAGTAATTGGGTCATGCATGAATATCGTCTCGAGGGGAAATTCTCTGTGCACAATCTTCCTAAAGCTGCAAAGAATGAGTGGGTGATTTGTAGGGTGTTTCAGAAGAGTTCAGCTGGTAAAAAAACACATATTTCTGGGATAATGAGGTTGGATACACTTGGTAATGAATTTGGTGGTTCTGTTTTACCACCACTAACCGATTCGATTGGGAAAATCAAACAATTGAATGATTCGGCTTACGTGCCCTGCTTCTCCAATTCAATTGATGTTCAAAGAAACCAAGGAGGGATCTTTGATTCATTCACGAACTCAATTTACGGTGTTTCTTCGAATAATCCACACGATGTTTTTCAAAGAGGATCATTATACTCTTCTTCTAATCAATCTAATTTTCATTTTCCTGGTTCTGTTTGCGGTGTTCAAGACCAATCAGTTTTAAGAGCTCTATACGAAAACAACAGTTTCAAATCCGAGCGACAACAACAGCAGCAGCAACAAATTGTGAGTGTTTCGCAGGAAACAGATCTAACTACTGATATAAACGCTGAAACATGTTCTGTTGTGTCAAATTTTGATATCGGTAGAAGGGCTTTCGAGAATAATAATCATCAACATCGTCCACCACCTGTTCATTTTGATGGTACTTTATGGAATTACTAA 1056 0.3854 MENISVFPSKEDEKMDLPPGFRFHPTDEELISHYLYKKVIDSSFSAKAIGDVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFKGKSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEGKFSVHNLPKAAKNEWVICRVFQKSSAGKKTHISGIMRLDTLGNEFGGSVLPPLTDSIGKIKQLNDSAYVPCFSNSIDVQRNQGGIFDSFTNSIYGVSSNNPHDVFQRGSLYSSSNQSNFHFPGSVCGVQDQSVLRALYENNSFKSERQQQQQQQIVSVSQETDLTTDINAETCSVVSNFDIGRRAFENNNHQHRPPPVHFDGTLWNY 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01917 351 ProSiteProfiles NAC domain profile. 17 167 IPR003441 GO:0003677|GO:0006355
Vivi1g01917 351 FunFam NAC domain-containing protein 100-like 26 171 - -
Vivi1g01917 351 Pfam No apical meristem (NAM) protein 18 142 IPR003441 GO:0003677|GO:0006355
Vivi1g01917 351 SUPERFAMILY NAC domain 14 167 IPR036093 GO:0003677|GO:0006355
Vivi1g01917 351 Gene3D NAC domain 26 171 IPR036093 GO:0003677|GO:0006355
Vivi1g01917 351 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01917 Vivi-Chr1 40841070 40842980 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01917 15 351 NAC Transcription Factor Family AT5G07680 58.358 1.05e-128 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi1g01917 NAM 1.7e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01917 - - cam:101502392 606.29