Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01913 ATGGAAACTGGACGAAACGAAACACCCTTTTTGGTTTTTCGTTTTGTCTCTAAATTTTTATTATGCGCCATCTCTGGAACTCTTACAGCATGTTTTGCCGTTGCTGGGGCTTTAACAGGAGCTATAGCTGGTGCTTTAGCAGCTAAGGCTACAAAGAGTGGTTTTCTCCGGGGAGTTTCATTAGGGGCCATTGCCGGGGCTATACTCTCGGTCGAGGTATTGGAAGCTTCCCGGGCCTACTGGTGTATGGAGCAAACTGGTTCGCGAGGAACGTCATCTATGGCAGATTTCATAGAGGAACTTGTTCGTGGAAGACTTGTAGAAGAATCGCTTACTCCTGCTATTTTAACTGCTTACAATTTGCAATTTGAGCAGGTTGGAATCGCTAATAACGCTGGTTATGATGAGATTCACGATGTTCATAGCTTAATAGCATCCAGAGGATTGTCAGGAGATTCATTGAGTAAGCTACCGCACCATACGATCTTGAAGGACATGAAGGCAGAGGATACTTTCTGTGCAATATGTTTACAGGATATGGAAGTAGGTGAAGTTGCAAGAAGCTTACCTCATTGTTACCATACATTTCACTTGATATGTGTGGATAAATGGCTTGTGAAGAATGATTCATGTCCTATTTGCAGACAGAATGTGTAG 657 0.4307 METGRNETPFLVFRFVSKFLLCAISGTLTACFAVAGALTGAIAGALAAKATKSGFLRGVSLGAIAGAILSVEVLEASRAYWCMEQTGSRGTSSMADFIEELVRGRLVEESLTPAILTAYNLQFEQVGIANNAGYDEIHDVHSLIASRGLSGDSLSKLPHHTILKDMKAEDTFCAICLQDMEVGEVARSLPHCYHTFHLICVDKWLVKNDSCPICRQNV 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01913 218 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 15 217 IPR044523 -
Vivi1g01913 218 Pfam Ring finger domain 173 215 IPR001841 -
Vivi1g01913 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 218 IPR013083 -
Vivi1g01913 218 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 31 - -
Vivi1g01913 218 SUPERFAMILY RING/U-box 154 218 - -
Vivi1g01913 218 ProSiteProfiles Zinc finger RING-type profile. 173 215 IPR001841 -
Vivi1g01913 218 SMART ring_2 173 214 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01913 Vivi-Chr1 40620534 40623010 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01913 16 218 C3H Transcription Factor Family AT1G74410 54.902 2.69e-71 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01913 - - gmx:100800105 347.436