Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01912 ATGGAAACTGGACGAAACGAAACACCCTTTTTGGTTTTTCGTTTTGTCTCTAAATTTTTATTATGCGCCATCTCTGGAACTCTTACAGCATGTTTTGCCGTTGCTGGGGCTTTAACAGGAGCTATAGCTGGTGCTTTAGCAGCTAAGGCTACAAAGAGTGGTTTTCTCCGGGGAGTTTCATTAGGGGCCATTGCCGGGGCTATACTCTCGGTCGAGGTATTGGAAGCTTCCCGGGCCTACTGGTGTATGGAGCAAACTGGTTCGCGAGGAACGTCATCTATGGTTGGTGATTATTTCATAGAGGAACTTGTTCGTGGAAGACTTGTAGAAGAATCGCTTACTCCTGCTATTTTAACTGCTTACAATTTGCAATTTGAGCAGGTTGGAATCGCTAATAACGCTGGTTATGATGAGATTCACGATGTTCATAGCTTAATAGCATCCAGAGGATTGTCAGGAGATTCATTGAGTAAGCTACCGCACCATACGATCTTGAAGGACATGAAGGCAGAGGATACTTTCTGTGCAATATGTTTACAGGATATGGAAGTAGGTGAAGTTGCAAGAAGCTTACCTCATTGTTACCATACATTTCACTTGATATGTGTGGATAAATGGCTTGTGAAGAATGATTCATGTCCTATTTGCAGACAGAATGTGTAG 663 0.4284 METGRNETPFLVFRFVSKFLLCAISGTLTACFAVAGALTGAIAGALAAKATKSGFLRGVSLGAIAGAILSVEVLEASRAYWCMEQTGSRGTSSMVGDYFIEELVRGRLVEESLTPAILTAYNLQFEQVGIANNAGYDEIHDVHSLIASRGLSGDSLSKLPHHTILKDMKAEDTFCAICLQDMEVGEVARSLPHCYHTFHLICVDKWLVKNDSCPICRQNV 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01912 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 220 IPR013083 -
Vivi1g01912 220 SUPERFAMILY RING/U-box 156 220 - -
Vivi1g01912 220 SMART ring_2 175 216 IPR001841 -
Vivi1g01912 220 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 31 - -
Vivi1g01912 220 ProSiteProfiles Zinc finger RING-type profile. 175 217 IPR001841 -
Vivi1g01912 220 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 15 219 IPR044523 -
Vivi1g01912 220 Pfam Ring finger domain 175 217 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01912 Vivi-Chr1 40620530 40623010 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01912 16 220 C3H Transcription Factor Family AT1G74410 53.398 1.80e-67 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01912 - - gmx:100800105 338.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01912 1 40620530 40623010 Vivi1g01912 1 40620530 40623010 ECH