Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01911 ATGGAAACTGGACGAAACGAAACACCCTTTTTGGTTTTTCGTTTTGTCTCTAAATTTTTATTATGCGCCATCTCTGGAACTCTTACAGCATGTTTTGCCGTTGCTGGGGCTTTAACAGGAGCTATAGCTGGTGCTTTAGCAGCTAAGGCTACAAAGAGTGGTTTTCTCCGGGGAGTTTCATTAGGGGCCATTGCCGGGGCTATACTCTCGGTCGAGGTATTGGAAGCTTCCCGGGCCTACTGGTGTATGGAGCAAACTGGTTCGCGAGGAACGTCATCTATGTTTGAGCAGGTTGGAATCGCTAATAACGCTGGTTATGATGAGATTCACGATGTTCATAGCTTAATAGCATCCAGAGGATTGTCAGGAGATTCATTGAGTAAGCTACCGCACCATACGATCTTGAAGGACATGAAGGCAGAGGATACTTTCTGTGCAATATGTTTACAGGATATGGAAGTAGGTGAAGTTGCAAGAAGCTTACCTCATTGTTACCATACATTTCACTTGATATGTGTGGATAAATGGCTTGTGAAGAATGATTCATGTCCTATTTGCAGACAGAATGTGTAG 573 0.438 METGRNETPFLVFRFVSKFLLCAISGTLTACFAVAGALTGAIAGALAAKATKSGFLRGVSLGAIAGAILSVEVLEASRAYWCMEQTGSRGTSSMFEQVGIANNAGYDEIHDVHSLIASRGLSGDSLSKLPHHTILKDMKAEDTFCAICLQDMEVGEVARSLPHCYHTFHLICVDKWLVKNDSCPICRQNV 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01911 190 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 15 95 IPR044523 -
Vivi1g01911 190 SMART ring_2 145 186 IPR001841 -
Vivi1g01911 190 ProSiteProfiles Zinc finger RING-type profile. 145 187 IPR001841 -
Vivi1g01911 190 Pfam Ring finger domain 145 187 IPR001841 -
Vivi1g01911 190 SUPERFAMILY RING/U-box 126 190 - -
Vivi1g01911 190 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 31 - -
Vivi1g01911 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 190 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01911 Vivi-Chr1 40620529 40623010 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01911 16 190 C3H Transcription Factor Family AT1G74410 50.249 2.06e-56 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01911 - - mtr:25493833 333.183