Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01909 ATGGAGACTGAGGAACAGGAACTTATTGATTTGAACAGCAACGAGAGTAATTGTGGTGGGAATAATAGCAAGAGTGGTGATGGGTTCATTGATAGGAGTAAAGTTAGGATTTTGCTTTGTGATAACGATTCCAAGAGTTCTGAAGAGGTTTTTACTCTTCTTTTGAATTGCTCTTATCAAGTCACGTCTGTAAAATCGGCAAGGCAAGTGATTGATGCATTGAATGCGGAGGGGCAATATATAGACATCATACTAGCTGAAGTCGACCTTCCAATAAAAAAAGGCATGAAGATGTTAAAGTACATAGCACGGGATAAAGAATTGCGCCGAATCCCTATTATAATGATGTCTGCACAAGATGAGGTACCAATTGTTGTAAAGTGCTTGAGGCTTGGAGCAGCAGACTATCTAGTAAAGCCTTTACGTACTAATGAGCTATTAAATTTATGGACGCACATGTGGAGAAGGAGACGCATGCTTGGACTTATAGAGAACAACATCGTGAATTATGATTTTGATATGGTAGCATCAGACCCAAGTGATGCCAATACAAATAGCACCACCTTGTTCTCTGATGACACAGATGACAGGTCCAAAAGAAACACCAATCCAGAGCCTGGAATTTCAATCCAACAAGAACACGAGGATAGCGTTGCCACCGATGCTGCTGTTATTGAGGAACTCCCATATGCTAATCTATCAGAATATCAGCCTGATGTACCTGGAATTAGTGACCGAAGAACAGGTTCTTCAGGACAGCATCCGCCATGCAACAAAGTTACGAATGGTGGCTTTGATGGTCCAAAGAAGAGTGAACTAAGAATTGGAGAGTCATCGGCCTTTTTCACTTATGTCAAAGCAACCGCAACAAAGAGCAACTTTGAAGAGATTGTGCATGTCGAAGATAATAGTACTTCACAAGGGGTGGAAGATATGAATCAAGCGTATTCTCAACAAGGGGGTAACGACCTTCAAAGACATGAAATTGGAGAAATGATTGAAAGCTGTTCACAAGATGACTTACCCAGAAGCAATAGTATACCTGATTCTTTCTCTATCGAGAGGTCGTGCACCCCACCTGTATCAATGGAGGTTTCACAACAAAATAACCATTACAACGAAGAACATCCACAGGGGGTAATTCATCCAAGAAGTGGAAGTTATGGTTCTGAGCTCAACCCACCGGGCATGCCTGCCCAACACGCTTATCAGTATTATATACCAGGAGTTGTTAATCATGTTATGATGCCATCATCGGCACAACCGTATCAAAATAATATCCAGGATCGTCAAAATCATGCTGGTTCATCTATGATTGCCCAGTACAGTCATCTTCCCCAATGTCCACCTCATGCAACTGGGATGACACCCTACCCGTATTTTCCAATGAGTATTTGTTTACAAACTGGTCAGGTTTCTACTATTCATTCATGGCCGTCATTAGGAAGTTCAACTTCATGTGAAGCAAAGTTGAGCAAAGTTGATAGGAGAGAAGCAGCATTGATGAAGTTTAGACAGAAAAGAAAAGAGCGCTGCTTTGAGAAGAAAATCAGGTATGTCAATCGGAAACAACTTGCAGAAAGGCGGCCTCGTGTTAGGGGACAGTTTGTCAGAAAGTTGAATGGTATTAATGTGGATCTAAATGGACAACCTGCTTCCACCGACTATGATAATGATGACGAGGAAGAGGATGAAGAAAACAATGGCGCGAGAGATTCCTCTCCTAAGGATGCTTGA 1737 0.418 METEEQELIDLNSNESNCGGNNSKSGDGFIDRSKVRILLCDNDSKSSEEVFTLLLNCSYQVTSVKSARQVIDALNAEGQYIDIILAEVDLPIKKGMKMLKYIARDKELRRIPIIMMSAQDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLIENNIVNYDFDMVASDPSDANTNSTTLFSDDTDDRSKRNTNPEPGISIQQEHEDSVATDAAVIEELPYANLSEYQPDVPGISDRRTGSSGQHPPCNKVTNGGFDGPKKSELRIGESSAFFTYVKATATKSNFEEIVHVEDNSTSQGVEDMNQAYSQQGGNDLQRHEIGEMIESCSQDDLPRSNSIPDSFSIERSCTPPVSMEVSQQNNHYNEEHPQGVIHPRSGSYGSELNPPGMPAQHAYQYYIPGVVNHVMMPSSAQPYQNNIQDRQNHAGSSMIAQYSHLPQCPPHATGMTPYPYFPMSICLQTGQVSTIHSWPSLGSSTSCEAKLSKVDRREAALMKFRQKRKERCFEKKIRYVNRKQLAERRPRVRGQFVRKLNGINVDLNGQPASTDYDNDDEEEDEENNGARDSSPKDA 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01909 578 ProSiteProfiles CCT domain profile. 497 539 IPR010402 GO:0005515
Vivi1g01909 578 SMART REC_2 35 150 IPR001789 GO:0000160
Vivi1g01909 578 MobiDBLite consensus disorder prediction 235 265 - -
Vivi1g01909 578 MobiDBLite consensus disorder prediction 541 578 - -
Vivi1g01909 578 Gene3D - 35 225 - -
Vivi1g01909 578 Pfam Response regulator receiver domain 37 148 IPR001789 GO:0000160
Vivi1g01909 578 PANTHER TWO-COMPONENT RESPONSE REGULATOR 35 301 IPR045279 GO:0009736
Vivi1g01909 578 MobiDBLite consensus disorder prediction 180 216 - -
Vivi1g01909 578 ProSiteProfiles Response regulatory domain profile. 36 154 IPR001789 GO:0000160
Vivi1g01909 578 MobiDBLite consensus disorder prediction 244 258 - -
Vivi1g01909 578 SUPERFAMILY CheY-like 31 160 IPR011006 -
Vivi1g01909 578 MobiDBLite consensus disorder prediction 1 23 - -
Vivi1g01909 578 Pfam CCT motif 497 539 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01909 Vivi-Chr1 40524350 40529626 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01909 24 577 Response Regulator Gene Family AT5G61380 50.157 0.0 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vivi1g01909 Response_reg 7.9e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01909 K12127 - gmx:100786522 894.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01909 1 40524350 40529626 Vivi1g01909 1 40524350 40529626 ECH