Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01896 ATGGCGCTGTTCAGAAGGTTCTTTTACCGGAAGCCGCCGGATCGCCTTTTGGAGATCTCTGAGAGGGTTTATGTTTTTGATTGTTGCTTCTCCCCGGACGTATTGGAAGAAGGTGAATACAAAGTTTATATGGGGGGAGTTGTAGCTCAGCTACAAGATCACTTTCCGGATGCTTCTTTCATGGTGTTCAACTTCAGAGAAGGGGAGAGGCGCGCTCAAGTCTCAGACATACTTTCTCAGTATGACATGACAGTTATGGAGTACCCTCGGCAATACGAGGGTTGTCCTCTTCTGCCTTTAGAAATGATCCATCACTTTCTTCGATCAAGTGAAAGCTGGTTGTCTGTGGAGGGGCAACAGAATGTGCTTTTGATGCATTGTGAAAGGGGAGGATGGCCTGTGCTGGCATTCATGCTAGCAGGTCTTCTGTTATACCGGAAACAGTACAGCGGGGAGCAAAAGACTCTTGAAATGGTCTACAAGCAAGCTCCCCGAGAACTGCTCCACCTTTTAACTCCGTTGAACCCGCAACCTTCTCAGTTCAGATACCTTCAGTATATTTCCAGGAGACATCTGGGTTCTGAGTGGCCGCCGTCTGACACACCGTTGTATCTGGACTGTCTGATTCTTAGAGACCTTCCAATATTTGATGATGGAAAAGGTTGCAGACCTGTTGTGCGTGTTTATGGTCCGGACCCTTCAAAACCTGCCAATAGAAGTTCGAAGCTTCTTTTCTCAACCTCAAACTCCATAAAGCATGTTCGACACTATCAACAGGCAGAGTGTATGCTTGTGAAGATTGATCTCCGTTGTCGTGTTCAAGGCGATGTGGTTCTTGAGTGCATAAATTTAAACGAAGATTCTACTAGTGAGGAGACGATGTTTAGAATTATGTTCCATACTGCATTTGTGCGGTCAAATATATTGATGCTGAGCCGTGATGAAATTGATATTTTATGGGATGCTAAGGATCAATATCCCAAGGACTTCAAAGCAGAGGTGCTTTTTTTGGACGCTGATGCTGTTATACCTGATCTGAACACAGTAACGGCGGTGAGTCAAGATGCAAATGAAACAGAAAGTGCTTCACCTGAGGAATTCTATGAAGTGGAAGAGATTTTCAGCAATGCAGCTGATGTGCAGGAAAGTAAGGCAGAGGATAATTCTCATACCTTTCATGACAATGCAGTGACTGATGGAAATCATAAAAGGATCTGGAGGGAGGATTCAGGTCCTCAAGCTTTTCAGGATTGCACGCCAGATGATGGGATTCACACACAGGCTGGAAAGATGGATTCCGACGTTAATGCTGTGAAAGATATCTCTGTTGATGATGCGAGCACGGATTCAAATCCTCAGGCAGTGAAGGATATTGCCGTGGATGATGGAGAAATTAAGTCAGCTTCCACTGCCATAACTTATGATATGAAGATACCTCTGGAAACAAAGGAAATCATTGAGGATGCTAATCGGGGATCGGCAATTATGCAGGACAAATATGATGAAGAAGATAATGAAGTAACAGAAAAGGAATTAGATTACAAGGAAGGGCAGCCCATGCCTGATAGTTCCAAACAAAAATCTGGTAAACTACTTCCATCTACTGCTAAGAAACAAATTCCATCAAACTCAAAGCCAGGAGATACTGTTGGAAAACAAAAGGTTAAAGAAACCACTGCTTTTCAGGCAAAACAAGCTAAACCAACTGCAGTGACGAGGTGGATTCCTTCTAACAAGGGTTCTTACACGAATTCAATGCATGTATATTATCCACCATCAAGGATTAATAGTGCACCACCTGGACTGTCAAATATAACCACTTCAAAGGAGAAAATGGACGATAACAAAACAAAATCCTTAGCTGCTCCATATGGCTCTGCAACAGCTGTTTCTGCTGACATGAAAAATGACTTGAAAAGTCGGAAGGTGACCACTTCAAAATCTTTCGGCCAAGTAGTATCAGAAATTGATGCAAAATGTCCATTATCGCCGCCATCAGTTAAAGAGACATCTCTTAAGACAGCAAGTCAAGTACAAGAACAGAGCTCAGAGCAATTGCTACAGCCTCCCGCACAGCGTCCTATTCCTCCTCCTCCTCCTCCACCACCACCACCTTTGCCACCACCCTTCACATCATTTAGTAGACAAGACATTAGGGTGAATTTACAGCCTGCAACTTCTCCCCCACCTCCACCTCCGCCACCACCTCAACCCTCCTGGAAGTCTGTGGCTTCATCAATAGTTGCAAGCAATGGAATTACATCAAGATTTTCTGAAGTACCTACTGTAGTGGCCCCATTAAGGCGTCCTCCACCACCACCATTCCTCCCTCCATGGCACGAAGTTTCAACCGTTCCTCCACCACCATCAACAGTACCTCCTGCAGAGCATGGATCATCAATTCCTCGTTCTCCTCCTCCCCCCTCATTTCCCATGTCTTCAACAAGCACGTCTCCAACTACATCTCAAAAAGCTCCACCTCCACCTCCACCCCCACCTCCTCCACCCTTTAATTCATATACAAGTTCACCTACACCACCTCTACCTCCAACTTCTTTTCGTAATGCTCCACCACCTCCGCCTCCACCTCCTTTTACTAATGCTCCACCACCACCTTTTACTAGGACTCCACCAGCACCACCTCCACCTCCTCCACCCCCTTTTAGTACATCTCATTCTGCACCCCCTCCTTTTACTAGAGCTCCACCACCCCCACCTCCACCTCCTCCAATGTCTAGAGCCCCTCCCCCTCCTCCAATGTATGGAGCCCCTCCTCCTCCGCCTCCTCCAATGTATGGAGCCCCTCCTCCTCCGCCTCCACCGATGTCTAGAGCCCCGCCACCTCCACCTCCTCCGATGCATGGAGCACCACCACCACCACCACCACCACCATTTCCTGGTGGTCGAGGCCCGCCACCACCACCACCACCTCCTGGTGGCAGAGGACCGCCACCACCACCACCACCACCTCCCGGTGGTCGAGGAGGCCCGCCACCACCACCACCACCTCCCGGTGGTCGAGGAGGCCCGCCACCACCACCACCACCTCCCGGTGGTCGAGGAGGCCCGCCTCCACCCCCTCCTCCTGGCGGTCGAGGAGGCCCGCCTCCACCCCCTCCTCCTGGCGGTCGAGGAGGCCCGCCTCCACCTCCTCCTCCTGGTGGTCGAGGAGGCCCACCTCCTCCACCTTTTCCTGGTGGTGCACCTCCACCACCTCCGCCCTTGGGTTCTAAAGGTGCAAATGTTGGAGCTGACCTAAACGGGAGAGGGCGTGGATATGCCCGCCCTGCTGCAGTGGCACCTCGACGATCCTCCTTAAAGCCTTTACATTGGAGTAAGGTTACGAGGGCACTGCAAGGAAGTTTATGGGAAGAATTACAAAGACATGGAGAACCGCTAATTGCACCAGAGTTTGATGTTTCGGAGCTAGAGAAACTTTTCTCTACAAATGTTCCAAAACCCACCGATACAAAATCTGGAGGGAGGCGCAAGTCTACTGGATCTAAACCCGACAAAGTTCAATTGGTTGACCTAAGGAGGGCTAATAATACGGAAATCATGCTTACTAAGGTTAAGATGCCACTCCCTGATATGATGGCTGCAGTACTAGCTTTGGATGAGTCAGTATTAGATGTTGATCAGGTGGAAAATCTCATTAAGTTTTGTCCTACCAAAGAGGAAATGGAACTTTTGAAGGCATACACTGGCAACAAGGAGAACTTGGGAAAGTGTGAACAGTTTTTTTTGGAGCTGATGAAGGTGCCAAGGGTGGAGTCAAAGTTAAGAGTTTTCGCTTTCAAAATTCAGTTTCAGGCTCAGGTTACAGAATTTAGGAAGAGTTTAAACACGGTAAACTCTGCCTGTGAAGAGGTCCGAAGATCCACCAAACTGAAGGATATCATGAAGAAAATTCTTTTTTTGGGCAATACATTGAATCAGGGAACGGCAAGGGGAGCTGCAGTTGGATTTAAGTTGGACAGTCTTTCAAAGCTCACCGATACTCGCGCTTCTAACAATAAGATGACATTAATGCATTATCTCTGCAAGGTACTAGCTGAAAGGTCGCCTGGACTTCTTGATTTTCACAAAGATCTCGTTAGTCTGGAAGGCGCCACTAAGATACAATTGAAATCATTAGCTGAAGAGATGCAGGCAATCACCAAGGGATTAGAAAAGGTTAAACAAGAGCTTGCTGGATCAGAAAATGATGGACCCGTATCCGAAGTTTTCCGTAAGACATTGAAAGGATTCATTACTGTAGCTGAGTCAGACGTGGCAGATCTAACAAAATTATATTCTACAGTGGGTAAAAATGCTGATGCACTTGCACTGTATTTCGGTGAGGAGCCTTCTCGATGCCCATGCGAGCAAGTTACCGCAACTCTATTAAATTTTATAAGGTTGTTCCGAAAAGCACATGAAGAGAATTGCAAACAAGCAGAATTAGAGAAAAAGAAAGCTGAGAAAGAGGCTGAGATGGAGAAGGCTAAGGGCGTTAATTTAACAAAAAAGAGTGGGAAAGATAGTTGA 4530 0.4724 MALFRRFFYRKPPDRLLEISERVYVFDCCFSPDVLEEGEYKVYMGGVVAQLQDHFPDASFMVFNFREGERRAQVSDILSQYDMTVMEYPRQYEGCPLLPLEMIHHFLRSSESWLSVEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYSGEQKTLEMVYKQAPRELLHLLTPLNPQPSQFRYLQYISRRHLGSEWPPSDTPLYLDCLILRDLPIFDDGKGCRPVVRVYGPDPSKPANRSSKLLFSTSNSIKHVRHYQQAECMLVKIDLRCRVQGDVVLECINLNEDSTSEETMFRIMFHTAFVRSNILMLSRDEIDILWDAKDQYPKDFKAEVLFLDADAVIPDLNTVTAVSQDANETESASPEEFYEVEEIFSNAADVQESKAEDNSHTFHDNAVTDGNHKRIWREDSGPQAFQDCTPDDGIHTQAGKMDSDVNAVKDISVDDASTDSNPQAVKDIAVDDGEIKSASTAITYDMKIPLETKEIIEDANRGSAIMQDKYDEEDNEVTEKELDYKEGQPMPDSSKQKSGKLLPSTAKKQIPSNSKPGDTVGKQKVKETTAFQAKQAKPTAVTRWIPSNKGSYTNSMHVYYPPSRINSAPPGLSNITTSKEKMDDNKTKSLAAPYGSATAVSADMKNDLKSRKVTTSKSFGQVVSEIDAKCPLSPPSVKETSLKTASQVQEQSSEQLLQPPAQRPIPPPPPPPPPPLPPPFTSFSRQDIRVNLQPATSPPPPPPPPPQPSWKSVASSIVASNGITSRFSEVPTVVAPLRRPPPPPFLPPWHEVSTVPPPPSTVPPAEHGSSIPRSPPPPSFPMSSTSTSPTTSQKAPPPPPPPPPPPFNSYTSSPTPPLPPTSFRNAPPPPPPPPFTNAPPPPFTRTPPAPPPPPPPPFSTSHSAPPPFTRAPPPPPPPPPMSRAPPPPPMYGAPPPPPPPMYGAPPPPPPPMSRAPPPPPPPMHGAPPPPPPPPFPGGRGPPPPPPPPGGRGPPPPPPPPPGGRGGPPPPPPPPGGRGGPPPPPPPPGGRGGPPPPPPPGGRGGPPPPPPPGGRGGPPPPPPPGGRGGPPPPPFPGGAPPPPPPLGSKGANVGADLNGRGRGYARPAAVAPRRSSLKPLHWSKVTRALQGSLWEELQRHGEPLIAPEFDVSELEKLFSTNVPKPTDTKSGGRRKSTGSKPDKVQLVDLRRANNTEIMLTKVKMPLPDMMAAVLALDESVLDVDQVENLIKFCPTKEEMELLKAYTGNKENLGKCEQFFLELMKVPRVESKLRVFAFKIQFQAQVTEFRKSLNTVNSACEEVRRSTKLKDIMKKILFLGNTLNQGTARGAAVGFKLDSLSKLTDTRASNNKMTLMHYLCKVLAERSPGLLDFHKDLVSLEGATKIQLKSLAEEMQAITKGLEKVKQELAGSENDGPVSEVFRKTLKGFITVAESDVADLTKLYSTVGKNADALALYFGEEPSRCPCEQVTATLLNFIRLFRKAHEENCKQAELEKKKAEKEAEMEKAKGVNLTKKSGKDS 1509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01896 1509 PANTHER FORMIN-J 1011 1504 - -
Vivi1g01896 1509 MobiDBLite consensus disorder prediction 765 813 - -
Vivi1g01896 1509 MobiDBLite consensus disorder prediction 667 689 - -
Vivi1g01896 1509 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Vivi1g01896 1509 Pfam Formin Homology 2 Domain 1102 1469 IPR015425 -
Vivi1g01896 1509 MobiDBLite consensus disorder prediction 521 608 - -
Vivi1g01896 1509 MobiDBLite consensus disorder prediction 494 616 - -
Vivi1g01896 1509 MobiDBLite consensus disorder prediction 1486 1509 - -
Vivi1g01896 1509 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1170 1497 - -
Vivi1g01896 1509 MobiDBLite consensus disorder prediction 1149 1172 - -
Vivi1g01896 1509 MobiDBLite consensus disorder prediction 741 758 - -
Vivi1g01896 1509 Gene3D - 205 336 - -
Vivi1g01896 1509 SMART it6_source 696 1508 IPR015425 -
Vivi1g01896 1509 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
Vivi1g01896 1509 MobiDBLite consensus disorder prediction 1157 1172 - -
Vivi1g01896 1509 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 188 IPR029021 -
Vivi1g01896 1509 Gene3D Protein tyrosine phosphatase superfamily 14 204 IPR029021 -
Vivi1g01896 1509 MobiDBLite consensus disorder prediction 822 1077 - -
Vivi1g01896 1509 Coils Coil 1376 1403 - -
Vivi1g01896 1509 MobiDBLite consensus disorder prediction 690 711 - -
Vivi1g01896 1509 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 336 IPR035892 -
Vivi1g01896 1509 FunFam Formin-like protein 1095 1481 - -
Vivi1g01896 1509 Coils Coil 1470 1504 - -
Vivi1g01896 1509 CDD PTP_PTEN-like 16 190 - -
Vivi1g01896 1509 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1096 1495 IPR015425 -
Vivi1g01896 1509 SMART PTEN_C2_2 198 1207 IPR014020 -
Vivi1g01896 1509 MobiDBLite consensus disorder prediction 654 1104 - -
Vivi1g01896 1509 MobiDBLite consensus disorder prediction 724 740 - -
Vivi1g01896 1509 Gene3D Formin, FH2 domain 1094 1481 IPR042201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01896 Vivi-Chr1 40210252 40220916 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01896 1 608 FH2 protein (formin) Gene Family AT5G07740 63.005 0.0 773