LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g01894	ATGGGTTGTGTGTTTGTGAAGCAAGGGGTGTCTGTGACACCTGCCGTTGATCATTCTGTTGATTCGGAGAGGAATATTAGTATTACTAACAAGAAGAACAAGAAGAAAGCGAGTGCTGAGTTAGTTGGATTGAGTTGGAGTGAGTTGGGTGAGTCAGGGAGAACGAGTTTGAATGGTGGAAATGAGTCTCTGAGTTTCAGGTTAGGGAATCTTAGTAAGTATGTGGAGGGAGAACAAGCTGCGGCCGGTTGGCCCGCTTGGCTTAGCGCGGTTGCTTCCGAAGCTATTCATGGTTGGGTTCCTCTCCGGTCGGATGCATTTGAAAAACTTGACAAGATTGGGCAGGGAACATATAGTAGTGTTTTTCGAGCGAAGGAGATTGAGACGGGGAAGATAGTGGCTCTAAAGAAGGTGAGATTTGACAATTTTGAGCCGGAAAGTGTGAGGTTTATGGCAAGAGAAATTATGATTCTGAGAAGACTTGATCATCCCAATATCATTAAACTGGAGGGTTTGATTACTTCAAGGTTGTCTTGTAGCATCTACCTTGTATTTGAGTACATGGAGCATGATGTCACAGGGCTATTGTCGAAACCAGAAATCAACTTTACCGAATCACAGATCAAATGCTACATGAAACAGTTGTTGTCTGGTCTAGAGCACTGTCACTCGAGGGGTGTAATGCACCGTGACATCAAAGGATCGAATCTTCTGGTGAATAATGAAGGGATATTAAAGGTAGCGGATTTTGGATTGGCGAATTTCTATAATTCCGGGAGCAAACAGCCGTTGACTAGTCGAGTTGTCACGTTATGGTACCGTCCTCCAGAGCTTTTGCTTGGTTCAACAGATTACGGTCCGTCTGTGGATATTTGGAGTGTTGGTTGTGTATTTGCAGAGCTACTGGTTGGGAAGCCAATACTTAAGGGGAGAACAGAGGTTGAACAGTTGCACAAAATCTTCAAGCTTTGTGGCTCTCCGCCGGATGAGTACTGGAAAAAGACCAAACTACCTCACGCAACTTTGTTCAAGCCACAGCAACCATATGATAGTTGCCTAAGAGAAACATTTAAAGATTTTCCTGCAAGCAGTGTAAATTTGTTACAAAATCTTCTTTCTATAGAACCGAACAGACGTGGAACTGCCTCATCTGCTCTCTCATTGGAGTATTTCAAAACAAAACCTTATGCATGTGACCCATCAAGCTTACCAGTATACCCACCTAGCAAAGAGATCGATGCAAAACACGACGAGGAGACAAAAAGGAAAAAGATTGCGGGGCGAGTTTGTGGACCTGAAAAAAGAAGATCATCGAGAAAGCCAGTAGGACTGAGTAAATTACCATTACCAGAGGATTTGACAAGTCAAATTCGAACTTCACAAAAGAAAGATGATAGATCTGTTCACATCCTTAAAGAAGAGAACACTAACATAAGCGACGAGGCATCAAAGCCATCCGGTGGTAAACCAGAAGATGCTTCCGATATGAAGAATGCATCTCAAGTTGAAATTCCCTTTCATGGGCCATTACAAGTTTCAAAATCAAGTGGATTCGCATGGGCAAAAAGGCGTAAAGATGACACTACTTCAATTAGATCCCACACTCGATCTATTTCTAAAGGACATATATTTAATTCATTAGAAACTTCTACACAAAATTCAAGGAATATTTCTGATGATAATGAAAACAACGAAAATAAGGAAGTTTTTGGAGGACGAACCAGCTCTAGAGGCCATGACGTATTTGAAATTTCTAAGCTAGTGGTGCAAAATCAATGGAGTAAGTTTGATCGACCAGATTCGTTTGATACTTGTGACGAGTACCACTCGCAAGAACTTTCGATGATGGTTTATCATAGAGAAGATTCACTGTCGAAGAGAAGCAATCAGAGTTATCAGGATCAAGGAGAGAAGGTTGAATTTTCAGGGCCCCTAATATCTCAAATGCATACAGTTGACGAGCTCTTGGAAAGACACGAGCGCCACATTCGGCATTCAGTCCGAAGATCATGGTTTCAAAGAGGTAAGAAGCATGGGAATTAA	2043	0.4209	MGCVFVKQGVSVTPAVDHSVDSERNISITNKKNKKKASAELVGLSWSELGESGRTSLNGGNESLSFRLGNLSKYVEGEQAAAGWPAWLSAVASEAIHGWVPLRSDAFEKLDKIGQGTYSSVFRAKEIETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMEHDVTGLLSKPEINFTESQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFYNSGSKQPLTSRVVTLWYRPPELLLGSTDYGPSVDIWSVGCVFAELLVGKPILKGRTEVEQLHKIFKLCGSPPDEYWKKTKLPHATLFKPQQPYDSCLRETFKDFPASSVNLLQNLLSIEPNRRGTASSALSLEYFKTKPYACDPSSLPVYPPSKEIDAKHDEETKRKKIAGRVCGPEKRRSSRKPVGLSKLPLPEDLTSQIRTSQKKDDRSVHILKEENTNISDEASKPSGGKPEDASDMKNASQVEIPFHGPLQVSKSSGFAWAKRRKDDTTSIRSHTRSISKGHIFNSLETSTQNSRNISDDNENNENKEVFGGRTSSRGHDVFEISKLVVQNQWSKFDRPDSFDTCDEYHSQELSMMVYHREDSLSKRSNQSYQDQGEKVEFSGPLISQMHTVDELLERHERHIRHSVRRSWFQRGKKHGN	680

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1g01894	680	MobiDBLite	consensus disorder prediction	410	440	-	-
	Vivi1g01894	680	Gene3D	Transferase(Phosphotransferase) domain 1	190	431	-	-
	Vivi1g01894	680	FunFam	probable serine/threonine-protein kinase At1g54610	94	189	-	-
	Vivi1g01894	680	MobiDBLite	consensus disorder prediction	457	491	-	-
	Vivi1g01894	680	ProSitePatterns	Protein kinases ATP-binding region signature.	113	136	IPR017441	GO:0005524
	Vivi1g01894	680	FunFam	probable serine/threonine-protein kinase At1g54610	190	430	-	-
	Vivi1g01894	680	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	227	239	IPR008271	GO:0004672\|GO:0006468
	Vivi1g01894	680	PANTHER	CELL DIVISION PROTEIN KINASE	105	395	-	-
	Vivi1g01894	680	SMART	serkin_6	107	391	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1g01894	680	CDD	STKc_CDK9_like	107	391	-	-
	Vivi1g01894	680	Gene3D	Phosphorylase Kinase; domain 1	94	189	-	-
	Vivi1g01894	680	MobiDBLite	consensus disorder prediction	402	497	-	-
	Vivi1g01894	680	MobiDBLite	consensus disorder prediction	534	559	-	-
	Vivi1g01894	680	MobiDBLite	consensus disorder prediction	515	575	-	-
	Vivi1g01894	680	MobiDBLite	consensus disorder prediction	519	533	-	-
	Vivi1g01894	680	SUPERFAMILY	Protein kinase-like (PK-like)	101	398	IPR011009	-
	Vivi1g01894	680	ProSiteProfiles	Protein kinase domain profile.	107	391	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1g01894	680	Pfam	Protein kinase domain	107	391	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi1g01894	Vivi-Chr1	40106559	40110344	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1g01894	99	423	Core Cell Cycle Gene Families	AT5G10270	51.906	1.81e-114	352

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Vivi1g01894		Pkinase	1.6e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1g01894	-		-	gmx:100816047	1130.16