Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01892 ATGTCGGACGAAGAGCATCAATTTGAATCCAAGGCCGATGCCGGTGCCTCCAAAACCTACCCCCAGCAGGCCGGTACCATCCGTAAAAGTGGTCACATCGTTATCAAGAATCGTCCCTGCAAAGTTGTGGAAGTTTCCACATCTAAGACTGGAAAGCACGGTCACGCAAAGTGTCATTTTGTTGCTATTGATATTTTTACCGGCAAGAAACTTGAAGATATTGTGCCTTCTTCTCATAATTGTGATGTTCCTCATGTGAATCGTACCGACTACCAGCTCATTGATATCTCTGAGGATGGATTTGTGAGTCTGCTTACTGAAAATGGCAACACTAAGGATGATCTCAAGCTTCCAACCGATGACAGTCTGCTCACTCAGATCAAGGATGGATTTGCGGAGGGAAAGGACCTTGTTGTGTCTGTGATGTCTGCTATGGGTGAGGAGCAGATCTGTGCCTTGAAGGATATTGGTCCCAAGAACTAG 483 0.4596 MSDEEHQFESKADAGASKTYPQQAGTIRKSGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLPTDDSLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01892 160 NCBIfam translation initiation factor IF-5A 17 153 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Vivi1g01892 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Vivi1g01892 160 CDD S1_eIF5A 86 156 - -
Vivi1g01892 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Vivi1g01892 160 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Vivi1g01892 160 Gene3D - 86 159 IPR012340 -
Vivi1g01892 160 FunFam Eukaryotic translation initiation factor 5A 86 158 - -
Vivi1g01892 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Vivi1g01892 160 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Vivi1g01892 160 Gene3D - 1 85 IPR014722 -
Vivi1g01892 160 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Vivi1g01892 160 MobiDBLite consensus disorder prediction 1 23 - -
Vivi1g01892 160 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Vivi1g01892 160 FunFam Eukaryotic translation initiation factor 5A 1 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01892 Vivi-Chr1 40083764 40085781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01892 1 159 Eukaryotic Initiation Factors Gene Family AT1G13950 89.937 1.21e-103 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01892 K03263 - ini:109174330 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01892 1 40083764 40085781 Vivi1g01892 1 40083764 40085781 ECH
Vivi2g02144 2 99990224 99992344 Vivi1g01892 1 40083764 40085781 PCT