Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01884 ATGTCAAGGCCTGTTGAGAGAATAGCAGAGATCAATGATGGAAAAGAGCTTTGGAAGATTGTTGTTAGGATTCACCACCGATGGAAAGTTGTCTCCAACAGCAAGGAACATTTTGAAATGATCTTTGTTGACAAATTGGGAGATGATATTCATGCTGTTGTTCCAGCACCGCATGTGTCGGTTTTCACCGAAAAATGCTTATTAGGCCATACTTATACTGTATCTAATTTTAAGGTGGTGCCTTATGTTCTGGCCTTCAGGGCATCGGGACACAGATATATGATAAAGTTTACTGCTGGAACGTCTGTTCTTGATGAAGACAAACATGAGATACCCCCGAAATCGATTTTATTTACAAGTTTTTCAGACATCATAACAGGGAGGTTTGACAAACATGTTCTGATTCATGTCGTTGGAATGGTGGATAGTATTGGTTATGCGCAGACTGAGTCAGGTGCAAAGAAGCAGCAAATTAGCATGATGTTGCGTGATCACAGCAACAACATGTTGAACTGTACTCTGTGGGAATCATACGCGGATCAGTTCATCAAGTTTAACAAAGTTAGGGTTGCTGCATCACTACCTACAGTTGTGTTGCTTCAGTATGCCAAAGTGAAGGAAGAAGGAAAGTATCCTCTGTCTGTGACAAACACCTACAATGTGACCCTTTTATGTGTTGATGCTGATTTTCCGATCATGAAAGACTTTATTGATAGAATGCCTGAGGAGAGCAAGGTAACCCTGTCTGACCAACTTGGAGGGAATTCCCAATATTCCTCCCAAAGTTCTGAAAATCAACAGCTCACTCCTGTGCAAAAATTGTTCTCAAAGGCTGTTGTTTTGCCTATTGCTGAGATTATTCAACTTACGGATGTTACATTTTGCGCTACTGTCGCTACAACAAAATTATTAGTAGCATCTCCATTTGGGTGGTTCTATCGTGCCTGCCATATGTGTCAATCTATAGCGCGCGGGGACAGCCCCCCCTTTGAGTGTGAAGCTGGTCATGAAACCATGGCTGAAGTCCTTAGGTATAAGATTGAAATTGAGGTTACTCACGGGGGCCAAAGCTGCAATTTTGTCTTCTGGAACAGAGAATGTGAAATGTTGTTGGGTTTATCTGCATCGCAACTTCGTAACACTATGATTCAGTTGTTTAAATAG 1164 0.4158 MSRPVERIAEINDGKELWKIVVRIHHRWKVVSNSKEHFEMIFVDKLGDDIHAVVPAPHVSVFTEKCLLGHTYTVSNFKVVPYVLAFRASGHRYMIKFTAGTSVLDEDKHEIPPKSILFTSFSDIITGRFDKHVLIHVVGMVDSIGYAQTESGAKKQQISMMLRDHSNNMLNCTLWESYADQFIKFNKVRVAASLPTVVLLQYAKVKEEGKYPLSVTNTYNVTLLCVDADFPIMKDFIDRMPEESKVTLSDQLGGNSQYSSQSSENQQLTPVQKLFSKAVVLPIAEIIQLTDVTFCATVATTKLLVASPFGWFYRACHMCQSIARGDSPPFECEAGHETMAEVLRYKIEIEVTHGGQSCNFVFWNRECEMLLGLSASQLRNTMIQLFK 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01884 387 Gene3D - 3 104 IPR012340 -
Vivi1g01884 387 SUPERFAMILY Nucleic acid-binding proteins 7 103 IPR012340 -
Vivi1g01884 387 SUPERFAMILY Nucleic acid-binding proteins 118 243 IPR012340 -
Vivi1g01884 387 CDD RPA1_DBD_A_like 19 103 - -
Vivi1g01884 387 Gene3D - 110 249 IPR012340 -
Vivi1g01884 387 Gene3D - 254 384 IPR012340 -
Vivi1g01884 387 SUPERFAMILY Nucleic acid-binding proteins 294 380 IPR012340 -
Vivi1g01884 387 Pfam Domain of unknown function DUF223 39 134 IPR003871 -
Vivi1g01884 387 CDD RPA1_DBD_B_like 137 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01884 Vivi-Chr1 40033101 40035232 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01884 5 378 Core DNA Replication Machinery Family AT5G45400 19.851 6.17e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01884 - - vvo:131613993 751.51