Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01883 ATGTCAGAGTTGCAGGAAACACATTCCTCTTCCTATCTATTTCTACTCTTTTCATTCATCCTTCTTTCAGGTAGTGTTGTTGTTGGAGATTCTTTAGATACAGACAAACAGATTCTGTTGAGGTTGAAAAAGTATCTAGACAACAAAACTCTTGCAGACCGAGGAAAGTACATATATTGGAACACTGATGGTTCAAATTCTAGTCCATGTCAATGGCGAGGAATTTTGTGTAGCGAAGAAAAGAGGGTGATTTCGATTGATCTTTCTAACAGTGACATCACTGGAGAGATATTTCAAAGCTTTTCCGAGCTGACCGAGTTAACGCATCTTGATCTTTCGCAGAATACACTCTTTGGAAATTTATCAGATGATTTGAGAAAGTGTCGAAAACTGTTGCATCTTAATCTCTCTCATAATATTCTTGAGGGAGAGTTGAATGTTTCTGGATTGAGAAATTTGGAGACGCTTGATTTGTCTTTGAATAGGTTTCATGGAGATATTGGGCTGTTAGATTTTCCTTCTGTTTGTGAAAATTTGGTCACTTTGAATATCTCGGGTAATAACTTAACTGGGGAGATTGGTGATAGTTTTGATCAGTGTTTGAGTTTGAAGTATTTGGATTTGAGTACTAACAAGCTGAGTGGAGGTCTATGGAGTGGATTTGCAAGGCTGAAGCAGTTTTCTGTTGCTGAGAATTTTCTCAATGGAAACGTTTCGTCTGAAGCGTTTCCGTTGAATTGTGAGCTTGTGGAATTAGACCTTTCTCAGAATAGGTTTATTGGGGAGGCACCAAAGGAAATATCTAACTGCAAGAATTTAACCGTGTTGAATCTTTCAACCAACAAGTTCACTGGAGCTATTCCTAATGAAATCGGGTCCATTTCGATGCTTAAAGGATTGTACTTGGGAGGAAACAACTTTTCAAGAGATGTTCCTGAGACACTTTTGAAATTGAGTAACTTGGTTTTCTTGGACTTGAGCAGAAACAATTTTGGTGGTGACATACAGAAGATATTTGGAAGTTTTAAGCAGGTTAGGTTTCTTCTGTTACACTCTAACTCCTACACTGGAGGATTGTTATCTTCTGGAATTTTCACATTGCCGAATATTACGCGGTTAGACCTTAGCTTCAACAAGTTTTCCGGTCCATTGCCTGTTGAAATCTCTCATATGCAAAGTCTAGAGCTTTTGATGTTATCATATAACAAATTCAATGGAACTATTCCATCAGAATTTGGAAATATGCGTAACTTGCAAGCACTTGATCTTGCTTTCAACCGGTTGAGTGGACCGATTCCTCCAAGCCTTGGAAACTTGAGATCACTACTGTGGTTGATGCTTGCAGACAATTCGTTAAACGGAACAATCCCTTCGGAGTTAGGGAACTGTAGTAGCTTGTTATGGTTAAACCTTGCCAACAATAACCTTACTGGGAAGTTTCCTCACGAACTTTCTAAAATTGGAAAGAATGCGATGGAAACATTTGAATTTAATAGGCGAAAAGACGGAATGGTTGCTGGCTCTGGTGAATGTTTAGCAATGAAGAGATGGATACCTGCAGATTACCCTCCATTCAGCTTTGTGTATGATATTTTAACAAGAAAAAATTGTAGAGGACTTTGGAATAAATTGCTAAAAGGGTATGGAATTTTCCCATTTTGCACACCAGGGTCCTCTCTTAGGTTACCTTTGATATCTGGTTATGTTCAGCTAAGTGGAAACAAACTAAGTGGTGAAATTCCATCAGAGATTGGAACTATGGTGAATTTCAGTTTGTTGCATTTGGGATTCAACAGTTTCTCTGGGAAACTTCCACCAGAGTTGGGAAACATTCCACTTGTGGTCTTGAACTTGACTACAAACAATTTTTCAGGTGAAATTCCGACCGAAATTGGAAACTTTATTTGCTTGCAAAATCTTGATTTGTCTCAAAACAACTTCTCGGGGAATTTTCCATCAAGTTTGAACAAAGTGGCTGAGCTTAACAAGTTCAACATCTCATACAATCCTTTCATACAAGGTGTGGTTTCATCAAGTGGACAATTTGTTACTTTTGGTAAAGATTCATATTATGGTGACCCTCTTTTGATCCTTCCTCAGTTCATCGATAATAGTACCACGAGAAACGATAAAAACATGGCTCACAAAGACCATAAAAAGCCTACAAAATTGTATGTGTTTTTGGTGTTTTTAGCCTTAACACTTGTTTTTATCATATTTAGTTTGATAACAATAGTTGTCTGTGCATTAGTCAAATCTCCATCAGATCAATATCTCTTGAGGGATCATACAAAACACTGCAATGACTCAAGCAGCTCAGGAATAGAATTCCAGCAATGGCTATCTGATTCGGTAAAAGTGATTCGTTTAAACAAGACAGCTTTCACCTATGCAGACATTTTGAAAGCAACAAACACTTTCTCAGAAAATCGAATCATAGGAAAAGGTGGATTTGGAACTGTATACAAAGGATTTTTCGCAGACGGTAGAGAAGTAGCAGTGAAGAAGCTTCTAAGCGAAGGACGCGAAGGAGAAAAGGAATTCCAAGCTGAAATGGAAGTTCTAAGCGGTCATGGTTTCGGTTGGCCTCATCCAAATCTCGTCACACTCTACGGTTGGTGCTTAAACAATTCAGAAAAGATACTTGTTTACGAGTACATAGAAGGCGGAAGCTTAGAAGATCTAATAACCGATAAAACACGTTTGACATGGAAGAAAAGACTACAAATAGCCATCGACGTAGCTCGCGCGCTTGTCTATTTGCACCACGAATGTGACCCTTCAATTGTTCATAGAGATGTGAAGGCTAGTAATGTGTTACTTGACAAAGAAGGTAAGGCAAAAGTAACAGATTTCGGACTAGCTAGAGTTGTTAACGTCGGTGATAGTCATGTGAGTACAATGGTAGCGGGAACCATTGGATATGTTGCACCTGAATATGGACAAACAATGAAAGCTACTACAAAAGGTGATGTTTACAGTTATGGTGTTTTGGTTATGGAGTTGGCTACAGGTAGAAGAGCAGTGGATGGAGGTGAAGAATGTCTGGTCGAATGGACGAGGCGTGTTATGGTGGGAAGAAAACAACAACAATATCATCATATGTTGAGTTATTTGGGCTCAGAGGAAATGGTTGAATTGCTATGTATTGGTTTGAAGTGTACAAATGAGACACCAAATGGTAGGCCAAATATGAAACAGGTTTTGGCTATGCTCATTTTGATATCTAAATCCTATGTTGGAGATTCAAGTGATCATAGACACATTGTTTAG 3273 0.3853 MSELQETHSSSYLFLLFSFILLSGSVVVGDSLDTDKQILLRLKKYLDNKTLADRGKYIYWNTDGSNSSPCQWRGILCSEEKRVISIDLSNSDITGEIFQSFSELTELTHLDLSQNTLFGNLSDDLRKCRKLLHLNLSHNILEGELNVSGLRNLETLDLSLNRFHGDIGLLDFPSVCENLVTLNISGNNLTGEIGDSFDQCLSLKYLDLSTNKLSGGLWSGFARLKQFSVAENFLNGNVSSEAFPLNCELVELDLSQNRFIGEAPKEISNCKNLTVLNLSTNKFTGAIPNEIGSISMLKGLYLGGNNFSRDVPETLLKLSNLVFLDLSRNNFGGDIQKIFGSFKQVRFLLLHSNSYTGGLLSSGIFTLPNITRLDLSFNKFSGPLPVEISHMQSLELLMLSYNKFNGTIPSEFGNMRNLQALDLAFNRLSGPIPPSLGNLRSLLWLMLADNSLNGTIPSELGNCSSLLWLNLANNNLTGKFPHELSKIGKNAMETFEFNRRKDGMVAGSGECLAMKRWIPADYPPFSFVYDILTRKNCRGLWNKLLKGYGIFPFCTPGSSLRLPLISGYVQLSGNKLSGEIPSEIGTMVNFSLLHLGFNSFSGKLPPELGNIPLVVLNLTTNNFSGEIPTEIGNFICLQNLDLSQNNFSGNFPSSLNKVAELNKFNISYNPFIQGVVSSSGQFVTFGKDSYYGDPLLILPQFIDNSTTRNDKNMAHKDHKKPTKLYVFLVFLALTLVFIIFSLITIVVCALVKSPSDQYLLRDHTKHCNDSSSSGIEFQQWLSDSVKVIRLNKTAFTYADILKATNTFSENRIIGKGGFGTVYKGFFADGREVAVKKLLSEGREGEKEFQAEMEVLSGHGFGWPHPNLVTLYGWCLNNSEKILVYEYIEGGSLEDLITDKTRLTWKKRLQIAIDVARALVYLHHECDPSIVHRDVKASNVLLDKEGKAKVTDFGLARVVNVGDSHVSTMVAGTIGYVAPEYGQTMKATTKGDVYSYGVLVMELATGRRAVDGGEECLVEWTRRVMVGRKQQQYHHMLSYLGSEEMVELLCIGLKCTNETPNGRPNMKQVLAMLILISKSYVGDSSDHRHIV 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01883 1090 SUPERFAMILY L domain-like 569 673 - -
Vivi1g01883 1090 FunFam Leucine-rich repeat receptor protein kinase MSP1 770 886 - -
Vivi1g01883 1090 Pfam Leucine rich repeat 368 428 IPR001611 GO:0005515
Vivi1g01883 1090 Pfam Leucine rich repeat 248 307 IPR001611 GO:0005515
Vivi1g01883 1090 SUPERFAMILY Protein kinase-like (PK-like) 789 1074 IPR011009 -
Vivi1g01883 1090 Gene3D Phosphorylase Kinase; domain 1 770 886 - -
Vivi1g01883 1090 SMART serkin_6 807 1074 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g01883 1090 PANTHER LEUCINE RICH REPEAT KINASE 2 350 1073 - -
Vivi1g01883 1090 Pfam Protein kinase domain 808 1070 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g01883 1090 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 239 335 - -
Vivi1g01883 1090 ProSiteProfiles Protein kinase domain profile. 807 1074 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g01883 1090 Pfam Leucine rich repeat N-terminal domain 33 78 IPR013210 -
Vivi1g01883 1090 SUPERFAMILY L domain-like 338 487 - -
Vivi1g01883 1090 Gene3D Ribonuclease Inhibitor 31 171 IPR032675 -
Vivi1g01883 1090 SUPERFAMILY L domain-like 46 358 - -
Vivi1g01883 1090 ProSitePatterns Serine/Threonine protein kinases active-site signature. 929 941 IPR008271 GO:0004672|GO:0006468
Vivi1g01883 1090 Gene3D Ribonuclease Inhibitor 172 241 IPR032675 -
Vivi1g01883 1090 Gene3D Ribonuclease Inhibitor 403 499 IPR032675 -
Vivi1g01883 1090 CDD STKc_IRAK 813 1075 - -
Vivi1g01883 1090 FunFam Putative LRR receptor-like serine/threonine-protein kinase 342 503 - -
Vivi1g01883 1090 ProSitePatterns Protein kinases ATP-binding region signature. 813 836 IPR017441 GO:0005524
Vivi1g01883 1090 SMART LRR_typ_2 104 128 IPR003591 -
Vivi1g01883 1090 SMART LRR_typ_2 318 341 IPR003591 -
Vivi1g01883 1090 SMART LRR_typ_2 391 414 IPR003591 -
Vivi1g01883 1090 SMART LRR_typ_2 415 438 IPR003591 -
Vivi1g01883 1090 SMART LRR_typ_2 439 463 IPR003591 -
Vivi1g01883 1090 SMART LRR_typ_2 367 390 IPR003591 -
Vivi1g01883 1090 Pfam Leucine Rich repeat 176 195 IPR001611 GO:0005515
Vivi1g01883 1090 Gene3D Ribonuclease Inhibitor 567 714 IPR032675 -
Vivi1g01883 1090 Gene3D Ribonuclease Inhibitor 242 402 IPR032675 -
Vivi1g01883 1090 FunFam Leucine-rich repeat receptor-like protein kinase 887 1081 - -
Vivi1g01883 1090 Gene3D Transferase(Phosphotransferase) domain 1 887 1087 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01883 Vivi-Chr1 40028509 40032647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01883 55 1072 Receptor kinase-like Gene Family AT1G55610 32.007 2.19e-153 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Vivi1g01883 Pkinase 4.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01883 - - gmx:100816573 1547.72