Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01872 ATGGAAAAACACCAAACTCAAGAACTCAAACACTCTTGCAAATTCTGCACCAAAACCTTCCCTTGTGGTAGATCCTTAGGAGGTCACATGAGGTCTCATATAAACAACTTATCATCATCATCTGAAAAAACAGAACTCAAACAAAAGCTTGATCCAATCAACAACAACGGTTGCATTGGTTCCGAAACAAACGGTAGCTATGGTTTAAGAGAGAATCCAAAGAAAACATGGAGAAAGAGAATTGCAGATTCAGGTGAAGAGCGTTTGGTTTATGATAAGTTCTGCAAAGAGTGTGGAAAATGTTTTCAGTCTTGGAAAGCTTTGTTTGGTCACATGAAGTGTCATTCGGAGAAAGAAAGAGTTTGCAACAGCTTGGAGGATCAAGATTCTGGGACGAATAACACGAAAGATGTTCAATCGGATAACGAAATCACTGCGCCGAGTAGGAAAAGAAGATCAAAGAGAACAAGAACAAGGTATAATAGCATAGTAGCTGCTGCTGCTGCAACTGTAACAGCAAGAACTTGTTCTTCTGTTTCTGAAGTTGAACAAGAGCAAGAAGAAGTTGCTATGAGCTTGATTATGCTTAGTAAAGATGCTAGTCCTTGGAGTGGTCTTGCTGAATCTTCGGATAACAATTCTGTTTACATCGAACATCATCGATCTTCTGTTCGAACTAATCTTGTTACTAAATTCAATGCCAGCAACAAGAATCTCACTACTGCTACTGCTAGTACTAGTACTATGAATATCGCGAAGTTGATGAAGCAAAAGAGTTTCAACTTTAAAGGGAAGAGTTCCGAAATTTTGGATACTGAAAAAGGATTCAAGATCAAGGGGGCCATCAAATCAACGAAACTCGAGCTTGATTATGTGTCAACAATGGATGATTCAGAAGCTGAAAATGGGAAAAACATAGTCAATGGAACAGAATCAGTTACTATGAAGAGTTACGGTGAATTCATCGGCGAGAGAGGAAAGTTTGAGTGTACTACTTGCAACAAAATCTTTCATTCATATCAAGCACTTGGAGGCCATAGAGCGAGTCATAAAAAGAACAAAGGGTGTTTTGCTTCAAAGATGGACAACAATGAGTTTGAAAATGATCTATCTCAAGAACCAACAACCGAAAGCAAGATCATGAAGATTATTCATAGTCATAACAGCAATGAACATGTTCAAAACATGAAGATCAAAGGTCATCATGAGTGTCCAATTTGCTTCAAGGTTTTTCAATCTGGTCAAGCTTTAGGTGGACATAAGAGATCTCATATGGTTGTTCCTTCTTCTGGTGGGGGTTCTGAGATTAGAGTTCCGCAGATTAGGGACTTTCTTGATCTTAATCTTCCTGCTGATGCTACTGAAGAAGGAAGTAGCAGTCATGCTGATTCTAACAGACCTTGGTGGATAGTTGAAAGTAACCATAAACAAGAGGCACTTGTAGGGTAG 1449 0.3892 MEKHQTQELKHSCKFCTKTFPCGRSLGGHMRSHINNLSSSSEKTELKQKLDPINNNGCIGSETNGSYGLRENPKKTWRKRIADSGEERLVYDKFCKECGKCFQSWKALFGHMKCHSEKERVCNSLEDQDSGTNNTKDVQSDNEITAPSRKRRSKRTRTRYNSIVAAAAATVTARTCSSVSEVEQEQEEVAMSLIMLSKDASPWSGLAESSDNNSVYIEHHRSSVRTNLVTKFNASNKNLTTATASTSTMNIAKLMKQKSFNFKGKSSEILDTEKGFKIKGAIKSTKLELDYVSTMDDSEAENGKNIVNGTESVTMKSYGEFIGERGKFECTTCNKIFHSYQALGGHRASHKKNKGCFASKMDNNEFENDLSQEPTTESKIMKIIHSHNSNEHVQNMKIKGHHECPICFKVFQSGQALGGHKRSHMVVPSSGGGSEIRVPQIRDFLDLNLPADATEEGSSSHADSNRPWWIVESNHKQEALVG 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01872 482 Gene3D Classic Zinc Finger 1 119 - -
Vivi1g01872 482 ProSitePatterns Zinc finger C2H2 type domain signature. 404 424 IPR013087 -
Vivi1g01872 482 Pfam C2H2-type zinc finger 95 117 - -
Vivi1g01872 482 Pfam C2H2-type zinc finger 328 352 - -
Vivi1g01872 482 Pfam C2H2-type zinc finger 11 33 - -
Vivi1g01872 482 Pfam C2H2-type zinc finger 401 425 - -
Vivi1g01872 482 ProSiteProfiles Zinc finger C2H2 type domain profile. 11 38 IPR013087 -
Vivi1g01872 482 ProSiteProfiles Zinc finger C2H2 type domain profile. 328 355 IPR013087 -
Vivi1g01872 482 MobiDBLite consensus disorder prediction 126 142 - -
Vivi1g01872 482 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 120 IPR013087 -
Vivi1g01872 482 SUPERFAMILY beta-beta-alpha zinc fingers 7 36 IPR036236 -
Vivi1g01872 482 ProSitePatterns Zinc finger C2H2 type domain signature. 13 33 IPR013087 -
Vivi1g01872 482 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 469 - -
Vivi1g01872 482 SUPERFAMILY beta-beta-alpha zinc fingers 94 350 IPR036236 -
Vivi1g01872 482 ProSiteProfiles Zinc finger C2H2 type domain profile. 402 424 IPR013087 -
Vivi1g01872 482 ProSitePatterns Zinc finger C2H2 type domain signature. 330 350 IPR013087 -
Vivi1g01872 482 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Vivi1g01872 482 SMART c2h2final6 11 33 IPR013087 -
Vivi1g01872 482 SMART c2h2final6 93 115 IPR013087 -
Vivi1g01872 482 SMART c2h2final6 402 424 IPR013087 -
Vivi1g01872 482 SMART c2h2final6 328 350 IPR013087 -
Vivi1g01872 482 MobiDBLite consensus disorder prediction 125 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01872 Vivi-Chr1 39856787 39858974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01872 402 455 C2H2 Transcription Factor Family AT1G26610 51.613 4.04e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi1g01872 zf-C2H2_6 4.6e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01872 - - psat:127136226 805.053