Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01870 ATGGTGAAGATCTGTGGAATCGGAGCTGGATATGTAGGGGGTCCAACGATGGCGGTTATAGCCCTCAAATGTCCTTCGATTGAAGTAGCTGTTGTCGACATCTCTCACCCTAGGATAGCAGCTTGGAACAGCGACAAACTCCCAATCTACGAGCCCGGCTTAGAACAGATTATACAACAATGCAGAGGAAAGAATCTCCTCTTCAGCACCGAAGTAGAGAAACATGTTTACGAAGCTGATATAATCTTTGTTAATGTTAACACGCCAACAAAAACAGGAGGCCGTGGAGCTGGCAAAGCTGCAGATTTAACTTATTGGGAAAGTGCGGCGAGGATGATCGCCGATGTTTCAAGATCAAACAAGATTGTCGTTGAGAAATCGACTGTTCCCGTTAGAACAGCTGAAGTGATTGAGAAAATTCTAGTCCACAATAGCAATGGCAAGGTCGAGTATCAAATTTTGTCGAATCCTGAGTTTCTTTCCGAAGGAACTTCTATTCAGGATCTACTAAATCCTGATCGGGTTCTAATCGGAGGAAAAGATAATCTTGAAGGTCTAGAAGCAATTCAGAAACTGAAAGCTATATATGCTAACTGGGTGCCTGAAGAGAGAATTATAACTACAAATGTTTGGTCTGCTGAACTCTCTAAGTTAGCTGATAACGCTTTTTTGGCTCAAAGGATTTCGTCGATTAATGCTATGTCGGCTTTATGCGAGTCTACTGGTGCAGATATTTCACAGGTTTCTTGCGTTTTAAGTAAAAACACTAAACTTGGTTCTAGATACTTAAATGCTAGTGTTGGGTTTGGTGGTTCCTGTTTTCAAAAAGATATACTTAATTTGGTTTATATATGCGAGTGTAATGGACTTCTCGAAGTCGCTAATTATTGGAAAGAGGTGATTAAGGTGAACGACTATCAGAAGAGTAGGTTTGTGAAAAAAGTTATAACATCCATGTTTAATACAGTTTCAGGTAAGAAGGTTGCTGTTCTAGGATTTTCCTTTAAGAAAGATACTAGTGATACTAGAAAAACTCCCGCGATCGATGTTTGCAAAGGTCTTTTGGCGGATAACGCTTGTTTGAGCATTTACGATCCACGTGTTAGCGAAGAACAGATTCGAAGGGATTTGTCTATGAATGAAATTCCATGGGACAATTCAGTCATGGCGGAGCCAATGAGGTTCGATTATACGAGGCAGGTTAGTGTGTTTGAGGATGTTTATGAGGCGACTAAAAATGCTCATGGGATATGTGTTCTGACAGAATGGGATGAGTTCAAGGAAATTGATTATCAAAGAGTGTTTGATAGTATGGAGAAACCAGCATTTGTTTTTGATGGTAGAAATGTTTTGGATGTTGATAAGTTGAGGGAGATTGGGTTTATTGTATACTCAATTGGGAAACCATTGAAGCAGTGGCAGAGTTGCTAG 1431 0.4025 MVKICGIGAGYVGGPTMAVIALKCPSIEVAVVDISHPRIAAWNSDKLPIYEPGLEQIIQQCRGKNLLFSTEVEKHVYEADIIFVNVNTPTKTGGRGAGKAADLTYWESAARMIADVSRSNKIVVEKSTVPVRTAEVIEKILVHNSNGKVEYQILSNPEFLSEGTSIQDLLNPDRVLIGGKDNLEGLEAIQKLKAIYANWVPEERIITTNVWSAELSKLADNAFLAQRISSINAMSALCESTGADISQVSCVLSKNTKLGSRYLNASVGFGGSCFQKDILNLVYICECNGLLEVANYWKEVIKVNDYQKSRFVKKVITSMFNTVSGKKVAVLGFSFKKDTSDTRKTPAIDVCKGLLADNACLSIYDPRVSEEQIRRDLSMNEIPWDNSVMAEPMRFDYTRQVSVFEDVYEATKNAHGICVLTEWDEFKEIDYQRVFDSMEKPAFVFDGRNVLDVDKLREIGFIVYSIGKPLKQWQSC 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01870 476 Gene3D - 242 476 - -
Vivi1g01870 476 FunFam UDP-glucose 6-dehydrogenase 210 241 - -
Vivi1g01870 476 Gene3D - 210 241 - -
Vivi1g01870 476 Gene3D - 1 209 - -
Vivi1g01870 476 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 215 IPR036291 -
Vivi1g01870 476 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 329 452 IPR014027 GO:0016616|GO:0051287
Vivi1g01870 476 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3 185 IPR001732 GO:0016616|GO:0051287
Vivi1g01870 476 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 1 472 IPR028356 GO:0003979
Vivi1g01870 476 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 211 310 IPR008927 -
Vivi1g01870 476 SMART UDPG_MGDP_dh_C_a_2_a 329 453 IPR014027 GO:0016616|GO:0051287
Vivi1g01870 476 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 211 305 IPR014026 GO:0016616|GO:0051287
Vivi1g01870 476 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 314 464 IPR036220 -
Vivi1g01870 476 FunFam UDP-glucose 6-dehydrogenase 242 475 - -
Vivi1g01870 476 PIRSF UDPglc_GDPman_dh 2 468 IPR017476 GO:0016616
Vivi1g01870 476 FunFam UDP-glucose 6-dehydrogenase 1 209 - -
Vivi1g01870 476 PIRSF UDPglc_DH_euk 1 476 IPR028356 GO:0003979
Vivi1g01870 476 NCBIfam nucleotide sugar dehydrogenase 3 449 IPR017476 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01870 Vivi-Chr1 39811653 39813956 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01870 K00012 - gmx:100781197 790.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g00385 6 9644414 9647507 Vivi1g01870 1 39811653 39813956 ECH
Vivi1g01870 1 39811653 39813956 Vivi1g01870 1 39811653 39813956 ECH