Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01856 ATGAGGAAGAGAGAGAGGGAAAACCCTTGTGGTGTATGTGGACACTATCACAAATATGAAGAAGGTGGAGTGTGTTCGATTTGTGGGCATAGGGTTCCTGTTGGATCGGAGAAAAGTTCGATTCAAGTTAGTGCTTTTCCTTCTGTGATCTTGCCAGAGTTTCTTTACTTGGGGAGCCATGATAATGCTTCGCGCTCTAAGCTTCTTAAAACTCAGGGGATTTCACAGATTCTCAATACCGTCCCTTCTTGTCAAAACTTTTACAAGAACTCATTTACATATCACTGCCTCCCGGATGACAAAGGTTTCCAATTTGATGAAGCAAACCAGTTTCTAGAGAGAAGAAAAATTTAA 354 0.4124 MRKRERENPCGVCGHYHKYEEGGVCSICGHRVPVGSEKSSIQVSAFPSVILPEFLYLGSHDNASRSKLLKTQGISQILNTVPSCQNFYKNSFTYHCLPDDKGFQFDEANQFLERRKI 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01856 117 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 114 IPR044212 GO:0009734|GO:0009738|GO:0033549|GO:0043407
Vivi1g01856 117 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 47 111 IPR029021 -
Vivi1g01856 117 Gene3D Protein tyrosine phosphatase superfamily 45 116 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01856 Vivi-Chr1 39753647 39758908 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01856 1 114 Protein tyrosine phosphatase (PTP) family AT2G04550 69.231 7.91e-58 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01856 K04459 - vvo:131604615 249.595