Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01840 ATGGCTTTCTTTGGTAAACTTGGGAGTATTCTACGACAATCTACAAACAGGAGGGTTATTTCAGAATTGCGTCCGGCTCCATCTGTTTTCCAGGCTATAAGATGCATGTGTTCTGCTCCAACCACAAAGCTTTTTATAGGGGGTATTTCGTATTCGACTGATGAGCCAAGTTTGAGGGAAGCTTTTTCTAGATACGGCGAAGTGCTTGATGCTAGGGTAATTATGGATCGCGAAACAGGTAGATCCAGGGGATTTGGCTTTATCACATTCAATTCAGTTGAGGAAGCATCTAGTGCTATTCAGGCCTTGGATGGTCAGGACCTTCATGGTCGTCGAGTTAGGGTAAATTATGCTAATGAAAGGCCTCGCGTATATGGTGGTGGTGGTGGTTACAGTGGAGGTGGCTACAGTGGTGGTGGAGGTGGTTACGGTGGAGGTGGCTACGGTGGTGGTGGCGGCTATGGTGGAGGTGGAGGTTATGGGGGTGGTGGATATGGTGGAGGCAGCTCTGGACCTGGTGGTTACGGTGGAGGAAGTGATGCTGGCAATAATTATTCTGCTCCTGGTGGAAGTGGGGCGAGTTATGGGAATGATGGCAGCAGTGGTTTTCCCGCTGACTTTGGTGGTGCAGTTAGTGATGCTGGCTCTGCTGGTGGTTATGATGGAAGTGGGGGGTTAGGATTTGGCAGCAGTGGACACCTTGATAGCAATGACAGTGGCAATGTAAATGAGGATTTGGGAAATTTTAAGGATGACAATGATGACGACACTGATAATTTTGCCAAAAGGGCCTGA 795 0.4843 MAFFGKLGSILRQSTNRRVISELRPAPSVFQAIRCMCSAPTTKLFIGGISYSTDEPSLREAFSRYGEVLDARVIMDRETGRSRGFGFITFNSVEEASSAIQALDGQDLHGRRVRVNYANERPRVYGGGGGYSGGGYSGGGGGYGGGGYGGGGGYGGGGGYGGGGYGGGSSGPGGYGGGSDAGNNYSAPGGSGASYGNDGSSGFPADFGGAVSDAGSAGGYDGSGGLGFGSSGHLDSNDSGNVNEDLGNFKDDNDDDTDNFAKRA 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01840 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Vivi1g01840 264 FunFam Glycine-rich RNA-binding protein 3 mitochondrial 21 140 - -
Vivi1g01840 264 MobiDBLite consensus disorder prediction 230 244 - -
Vivi1g01840 264 PRINTS Eggshell protein signature 126 141 - -
Vivi1g01840 264 PRINTS Eggshell protein signature 154 164 - -
Vivi1g01840 264 PRINTS Eggshell protein signature 38 54 - -
Vivi1g01840 264 PRINTS Eggshell protein signature 189 207 - -
Vivi1g01840 264 Gene3D - 13 142 IPR012677 -
Vivi1g01840 264 MobiDBLite consensus disorder prediction 245 264 - -
Vivi1g01840 264 MobiDBLite consensus disorder prediction 225 264 - -
Vivi1g01840 264 MobiDBLite consensus disorder prediction 190 210 - -
Vivi1g01840 264 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 4 196 - -
Vivi1g01840 264 SMART rrm1_1 43 116 IPR000504 GO:0003723
Vivi1g01840 264 SUPERFAMILY RNA-binding domain, RBD 39 152 IPR035979 GO:0003676
Vivi1g01840 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Vivi1g01840 264 CDD RRM2_NsCP33_like 43 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01840 Vivi-Chr1 39381230 39383994 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01840 44 176 Eukaryotic Initiation Factors Gene Family AT1G71770 28.169 2.06e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01840 K12741 - gmx:100799124 219.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01840 1 39381230 39383994 Vivi1g01840 1 39381230 39383994 ECH