Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01832 ATGGCGAAAACTGTCAGCCCCAACGCCATTTCTTACTTGTTTGCAAATCCATCTCCCGATTCTTCATCAGATATTCCTGATATCGTTGTTCAAGTTGTTGATCTAAAATTCGTGGGAAACAGATACATGTTCTATGCTAATGATGGAATGAAGAAAGTGAACTCAATTCTTCCGACGAATCAGTCCTCGGATGTGCTCTCCGGGAAGATTCAGAATCTCGGGCTTATTCGCATTCTTGATTACACTCTGAATGATATTCCCAATAAATCTGAGAAATATCTTCTTGTAACCAAGTGTGAACCTGTTTCTCCTGCGCTTGAAGTGGAGATAAAAAGTGAACAGCCAAGTATCACTTTGAAGCCAAAGCAAGAATCTGGTATTGATTTGAAGCCGAAGCAGGGTGTTGTCTCAAAATCTGCTGCTCAGATTGTACATGAGCAACATGGAAATTCGGCTCCTGCTGCTAGAATGGCTATGACACGTAGGGTGCGTCCTCTTGTTTCTTTGAATCCTTATATGGGTACTTGGACAATCAAGGTCAGTGTTACCAGCAAAGGAACCTTGCGTACATATAGGAATGCTAGAGGAGAAGGATGTGTATTCAATGTTGAATTAACTGATGAAGATGGTACTCAGATTCAAGCAACAATGTTTAATGATGCGGCTAGGAAGTTTTATGAAAAGTTTGTAATGGGGAAGGTTTATTATGTTTCAAAAGGGACTTTGAAAGTTGCTAACAAACAGTTCAAAACTGTGCAAAATGATTATGAAATGACACTGAATGAAAACTCTGAGGTGGAAGAGGTTGCTAGTGAAGCTAGTTTTGTTCCGGAGACAAAATTCAACTTTGTACCAATTGATCAGTTGGGTCCTCATGTCAATAAGTCTGATCTTGTTGATGTTGTTGGAATTGTTAAGAATGTCTCTTCAACAATGAGTATTAGAAGGAAGAGCAACAATGAGACTGTTCCCAAGCGTGACATTACAATTGCAGATGAAAGCAAGAAGACAGTTGTTGTCTCTTTGTGGGGTGAACTTGCAACTAACATAGGACAAGAGTTATTGGACATGGCTGATAAATCTCCAGTAGTTGCAATCAAATCTGTGAAGGTTGGCGACTTTCAAGGTGTTTCTTTGTCAGCTATAAGCAAAAGTTTGGTCCTAATTGATCCAGAAGTACCTGAAGCTCAGAAGCTCAGATGCTGGTATGACTCTGAAGGCAAGGATACTGCAATGGCTTCTTTAAGCTCTGGCTCAACTAATTCTGGTGGTGGAAGCAGATCAGTGTACTCTGACCGTGTTTCACTCTCTTACATAACATCCAACCCCTCCTTGGGGGCTGAGAAGCCTGCTTTCTTTAGTATCAGAGGATACATAAATTCCATTAAGCCAGATCAGGCAATGTGGTATCGTGCTTGTAAGACTTGCAATAAGAAAGTTACTGAAAGCATTGATGATGGGTACTGGTGTGAAAGTTGCCAGAAAAATGATCAAGAGTGCAATTTAAGATATATTATGATTGCAAAAATTATTGATGCAAGTGGTGAGGCATATATATCAGCCTTTAATGAAGAAGCTGAGAGGCTCATTGGGTGTTCTGCTGATGAGCTAGGCAACCTTAGATCACAGGAGGGAGAAGAAAATCCTTATCAGATGAAGTTGAAGGAAGCTACTTGGGTTCCACACCTCTTTCGTGTTAGTGTTTCTCAGAATGAGTATAATAATGAGAAGAGGCAAAGGATAACAGCACGGGCAGTTGTCCCTGTTGACTTTGCTGCTGAGTCAAAGATTCTTCTTGAAGACATATCAAAGATGATAGCCTCTCATTAA 1830 0.4038 MAKTVSPNAISYLFANPSPDSSSDIPDIVVQVVDLKFVGNRYMFYANDGMKKVNSILPTNQSSDVLSGKIQNLGLIRILDYTLNDIPNKSEKYLLVTKCEPVSPALEVEIKSEQPSITLKPKQESGIDLKPKQGVVSKSAAQIVHEQHGNSAPAARMAMTRRVRPLVSLNPYMGTWTIKVSVTSKGTLRTYRNARGEGCVFNVELTDEDGTQIQATMFNDAARKFYEKFVMGKVYYVSKGTLKVANKQFKTVQNDYEMTLNENSEVEEVASEASFVPETKFNFVPIDQLGPHVNKSDLVDVVGIVKNVSSTMSIRRKSNNETVPKRDITIADESKKTVVVSLWGELATNIGQELLDMADKSPVVAIKSVKVGDFQGVSLSAISKSLVLIDPEVPEAQKLRCWYDSEGKDTAMASLSSGSTNSGGGSRSVYSDRVSLSYITSNPSLGAEKPAFFSIRGYINSIKPDQAMWYRACKTCNKKVTESIDDGYWCESCQKNDQECNLRYIMIAKIIDASGEAYISAFNEEAERLIGCSADELGNLRSQEGEENPYQMKLKEATWVPHLFRVSVSQNEYNNEKRQRITARAVVPVDFAAESKILLEDISKMIASH 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01832 609 Pfam Replication factor-A protein 1, N-terminal domain 5 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vivi1g01832 609 FunFam Replication protein A subunit 4 114 - -
Vivi1g01832 609 FunFam Replication protein A subunit 275 414 - -
Vivi1g01832 609 SUPERFAMILY Nucleic acid-binding proteins 164 271 IPR012340 -
Vivi1g01832 609 SUPERFAMILY Nucleic acid-binding proteins 1 107 IPR012340 -
Vivi1g01832 609 CDD RPA1_DBD_A 165 268 - -
Vivi1g01832 609 Pfam Replication protein A OB domain 292 389 IPR031657 -
Vivi1g01832 609 Pfam Replication factor-A C terminal domain 452 598 IPR013955 -
Vivi1g01832 609 FunFam Replication protein A subunit 418 605 - -
Vivi1g01832 609 SUPERFAMILY Nucleic acid-binding proteins 281 408 IPR012340 -
Vivi1g01832 609 PANTHER REPLICATION FACTOR A 1, RFA1 176 568 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vivi1g01832 609 CDD RPA1_DBD_C 439 604 IPR047192 -
Vivi1g01832 609 FunFam Replication protein A subunit 162 271 - -
Vivi1g01832 609 Gene3D - 4 117 IPR012340 -
Vivi1g01832 609 Gene3D - 416 605 IPR012340 -
Vivi1g01832 609 CDD RPA1_DBD_B 298 404 - -
Vivi1g01832 609 Gene3D - 276 415 IPR012340 -
Vivi1g01832 609 NCBIfam replication factor-a protein 1 (rpa1) 5 604 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vivi1g01832 609 Gene3D - 162 271 IPR012340 -
Vivi1g01832 609 Pfam OB-fold nucleic acid binding domain 182 262 IPR004365 GO:0003676
Vivi1g01832 609 SUPERFAMILY Nucleic acid-binding proteins 431 606 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01832 Vivi-Chr1 39220339 39223434 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01832 1 604 Core DNA Replication Machinery Family AT5G08020 69.142 0.0 895
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01832 K07466 - qsa:O6P43_002222 920.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01832 1 39220339 39223434 Vivi1g01832 1 39220339 39223434 ECH