Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01828 ATGATGATAGAAAACTCAACTGGCAAAGGTTATTACAGTGAAGCAACAAAGGAAGAAGATGAAAATGGAACAATGAAATTCTCTAACAAAGCAATAGCTACCTCAAGACAATGGACATCGTCATCGAGAAATCCGAGAATCGTGAGAGTGTCGCGTTCTTTAGGAGGAAAAGACAGACACAGCAAAGTGTGCACAATTAAAGGATTGCGAGACCGTCGAATTAGGTTGTCTGTACCAACAGCAATTCAGTTATATGATCTTCAAGACAGGCTTGGTTTAAGTCAACCTAGTAAAGTTGTTGATTGGTTACTTGAAGTAACTCAATCTGATATTGAGAAGTTACCACCTCTTGATTTTAGTACTCAACAACAAACCCTAAGGTATAGTTTGCAGAATCCTCAACAATCAAGTTTTTCTCTTGGAACTGGTTTTTATGATCATCAATTCAAAGGTAAAGAGCCTGAAAATTCTGCAGAAAAGGGTAACTATTATAGTTCAAATTATTCATCAACTGGTTTTCCTTTTCCATATACTAATAACAACTTGGATCCTTCAAGTACTCTTTCATTATCACAATTTGGAGGCTATCATGGTAATTTATTTCAGCAAAACAGTAATGGAAGTGCTATGCAGTTTTCATCTTCTTCTAATTTGACAGTACCTAATTCATCAGGTAATTCACAGTTACTTTTTTGTCCTCCTTCTGTTATGCCATCATCACTTTTTAGTCCTACTCAGAATGCTCCATCCATGGAAAGTGATTTTCAAAGACAGTTCAACCATGTTCAGATCTTGAATAATTCTTCATCGACTAGTACTTTGATCCCGTCTCTTCATCTTCCAATCAATTCGCCTTTTAGACGCAACCAAACAATGCCGTTTATAAATTCCAAGCTTCTTGATTCAGATCATAATAACACCAGAAATGGATAG 933 0.3612 MMIENSTGKGYYSEATKEEDENGTMKFSNKAIATSRQWTSSSRNPRIVRVSRSLGGKDRHSKVCTIKGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLEVTQSDIEKLPPLDFSTQQQTLRYSLQNPQQSSFSLGTGFYDHQFKGKEPENSAEKGNYYSSNYSSTGFPFPYTNNNLDPSSTLSLSQFGGYHGNLFQQNSNGSAMQFSSSSNLTVPNSSGNSQLLFCPPSVMPSSLFSPTQNAPSMESDFQRQFNHVQILNNSSSTSTLIPSLHLPINSPFRRNQTMPFINSKLLDSDHNNTRNG 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01828 310 Pfam TCP family transcription factor 56 152 IPR017887 -
Vivi1g01828 310 ProSiteProfiles TCP domain profile. 56 114 IPR017887 -
Vivi1g01828 310 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 18 259 IPR005333 GO:0003700
Vivi1g01828 310 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01828 Vivi-Chr1 39169184 39170886 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01828 38 119 TCP Transcription Factor Family AT5G60970 82.927 4.54e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vivi1g01828 TCP 2.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01828 - - psat:127073713 540.421