Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01824 ATGGAATCTTGGAGTTATATATCTGAAGAAAAGGGTTATGTTTCCAATGAGAATCAAGGTTCTGGAGAAATGGGTTTTTGTGAAATGTTAGGGAAACAATTCTCAGATGATTTCAATTTCATTGGGAGTGTTTCAAGCAAGAAACTTGATGCTAAATTTGGTGACCCAAATGGGTTTTCTTTGAAAGGGGATTCAAATTCCAAGCTTTCTAACTCTGTGGTGGAAACTAATGGTTGGGATTCTCTTATTGATTTGAAGCTGGGACATTTTGGTGATCATGGTCATGGAGTGCCTATTTTGTCTTCTTGTGAGTCATCAACCCCTCCCAAGAGAGTTAGAGTTCATTCTCTGACTGCATACTGTCAAGTTTATGGCTGTAACAAGGATCTAAGTTCTTGTAAAGATTACCATAAAAGGCACAAAGTTTGTGAGGTTCACTCCAAGACTGCTGTTGTCATAGTGAATGGAATTGAGCAGAGGTTTTGTCAACAATGTAGCAGGTTTCATTTGCTGTCTGAATTCGATGATGGTAAGCGCAGTTGCCGTAAACGACTTGCAGGCCATAATGAGCGTCGAAGAAAACCACAAGTAGGCGCTCACTCCGCGAATTCCAGGCGATTGTTTCAGCCATGTGGTGATATAAGGTTCCACGGAACCAAGCCACCACAGGCGTCTTTTATCTGTCCAGACGTGTTCTCGAATGGTTTCTCGAGACCGATTAAATCAGAACATGAAACCGGCTTTAGACCTTTATCTTCCGTGCCTGTTACGAATGGACATCATCAACCAAGGTCTTTGTTTGCTTCGTACAACGGCAAACAATTTCCCTTCCTTCATGAAAATGTTGCTACATCCACTACAGGTAGCAGCATGTTCGGTGAAAACAATAACCATTATGCACATGCCGTCGGCAATACCTCGTTAGGAAGAGAAGACTTCAATGCTTTTCATGCATCAACCGTTCGAGGATTATCAGGAATTTCAGACTCTTGTGCTCTCTCTCTTCTGTCATCTCAATCCAAGAACACTTCAAGCAATTCGTCGGGAATTCCATTTGATCACCCTCCGGTTATCCCTACCAGCCATAGCCATCTCTATAGCATAAGATCACAAACGACATCCTCAAGCCGAGTGTCTGATGGATTCTTATCAGAATTAAATCCTGCAGACGGAAGTCATCTCAGTCCTTTATTGTTACCAGTCAATAATGACATTGTGAACTTCGAAATGGCAGATGGAATCTTCCAAGATTCAGATTTTGTGAATGCTAAAGACCGTCTTTCGTGCGAAGATGATGCAACCATTGACTTACTACAACTGTCGTCGCAGCTTCAGCGAGTCGAGCATCATAGACAATCTCTGCAGGTGAAGAATGAGAGTGATTCTTCTTGCACTCTCCGGATTACTTAA 1410 0.422 MESWSYISEEKGYVSNENQGSGEMGFCEMLGKQFSDDFNFIGSVSSKKLDAKFGDPNGFSLKGDSNSKLSNSVVETNGWDSLIDLKLGHFGDHGHGVPILSSCESSTPPKRVRVHSLTAYCQVYGCNKDLSSCKDYHKRHKVCEVHSKTAVVIVNGIEQRFCQQCSRFHLLSEFDDGKRSCRKRLAGHNERRRKPQVGAHSANSRRLFQPCGDIRFHGTKPPQASFICPDVFSNGFSRPIKSEHETGFRPLSSVPVTNGHHQPRSLFASYNGKQFPFLHENVATSTTGSSMFGENNNHYAHAVGNTSLGREDFNAFHASTVRGLSGISDSCALSLLSSQSKNTSSNSSGIPFDHPPVIPTSHSHLYSIRSQTTSSSRVSDGFLSELNPADGSHLSPLLLPVNNDIVNFEMADGIFQDSDFVNAKDRLSCEDDATIDLLQLSSQLQRVEHHRQSLQVKNESDSSCTLRIT 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01824 469 ProSiteProfiles Zinc finger SBP-type profile. 118 195 IPR004333 GO:0003677
Vivi1g01824 469 FunFam Squamosa promoter-binding-like protein 14 112 182 - -
Vivi1g01824 469 Gene3D - 117 182 IPR036893 GO:0003677|GO:0005634
Vivi1g01824 469 SUPERFAMILY SBT domain 119 199 IPR036893 GO:0003677|GO:0005634
Vivi1g01824 469 Pfam SBP domain 121 194 IPR004333 GO:0003677
Vivi1g01824 469 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 65 390 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01824 Vivi-Chr1 39069778 39072866 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01824 83 232 SBP-box Gene Family AT1G69170 56.494 1.07e-46 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vivi1g01824 SBP 2.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01824 - - gmx:100817547 573.163