Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01822 ATGGGAAGAGGGAGAGTTGAACTAAAGAGGATAGAGAACAAAATTAACAGACAAGTCACTTTTGCTAAGAGAAGAAATGGTGTTCTCAAGAAAGCTTATGAGCTTTCAGTCCTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTCTAACCGTGGCAAACTCTATGAGTTCAGCAGTACCTCCTGCATGATGAAAACTTTGGAGAAGTACCACAAGTACAGTTACAGTGCACTAGAGACCAATCAACAAGCCAATGATGCTCAGAATTACCAGGAATATGTGAGATTAAAAGCCAATGTAGAAATCTTACAACGTTCACAAAGGAACCTTCTTGGAGAAGATATTGCACAAATGAATACAAATGAACTCCAGCAGATTGAGAATCAATTAGAGACAGCACTTAAGAGTATAAGATCAAAAAAGACTCAATTCATGCTTGATCAACTAGCTGATCTTCACAACCGGGAAACAGTGCTTGTTGAAACTAATCATGCACTAAGAAGTAAGTTGGAAGAAAGTAATGAGTCTAATATCCATTACGTTCACCATCCTCAATCAGAAGGATTTTTTCACGGAGTGAATTCCAACTTGCAAATTGGATACAATATGGTGGGTTCTTCTGATGATGTAAACGTTGGAGCTTCCTCCTTAAGTATGAATGGATACGCCACTGGCTGGATGCTTTGA 687 0.3886 MGRGRVELKRIENKINRQVTFAKRRNGVLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSCMMKTLEKYHKYSYSALETNQQANDAQNYQEYVRLKANVEILQRSQRNLLGEDIAQMNTNELQQIENQLETALKSIRSKKTQFMLDQLADLHNRETVLVETNHALRSKLEESNESNIHYVHHPQSEGFFHGVNSNLQIGYNMVGSSDDVNVGASSLSMNGYATGWML 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01822 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi1g01822 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi1g01822 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi1g01822 228 Pfam K-box region 81 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi1g01822 228 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi1g01822 228 Coils Coil 116 143 - -
Vivi1g01822 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi1g01822 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi1g01822 228 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vivi1g01822 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi1g01822 228 FunFam MADS-box transcription factor 1 13 88 - -
Vivi1g01822 228 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Vivi1g01822 228 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Vivi1g01822 228 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi1g01822 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01822 Vivi-Chr1 38970033 38979972 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01822 1 228 MADS-box Gene Family AT5G15800 53.053 5.67e-84 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi1g01822 K-box 4.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01822 K09264 - gmx:100797819 347.436