Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01804 ATGGAGCTTCCTCAATCTCGTCCATGTGGAGCCGAAGAAGCAGGGAGGAAACCGACGCATGATTTTCTGTCGCTATACAGTAATTCAACTGCCGAACAAGATCCAAGGTCTTCTGCTCAAGCAAGTTACCTCAAGACCCATGATTTCTTGCGGCCACTAGAGCAGGTAGAAACAAAATCCAGTGCCAAAGAAGAAGCCACAGATGAAATCTCATCGGCCGTTCAGAAGCAACCGCCTTTACCTACACCAGCTTCAGTTGAGCACCTCTTACCTGGAGGAATTGGGACTTACACTATTAGCCACATTAATTCCTACGTCAATAATACTCAAAGGGTTCCAAAGCCTGAATCATCACTTTTCACTGTGCATCAAGCAACTAGTGCGGATAGAAACGATGACTCCAACTGTAGTTCACATACTTCAAGCGGTTTCACATTATGGGAAGAGTCTGAGATTAAAAAGGGAAAGACAGAAAAGGAGAATAATGTTGGAGAGAAACCCATTATAGGAGATTCTGCTGCTAAGCTGGGGACATGGACAACGGAGCGGATGTCTCAATCCTTTTCTAATAATCATCATGGCAGCTTCAACTCTCGCTCTTCATCTCAGACAACTGGACAGAAGAACCAGAGTTTTATGGAAATGATGAAATCTGCACAGGATTGTGCCCAGGATGAAGAGCTAGAAAATGAAGGAACATTTTTTCTCAAGAGAGAAACCTTGGATACTCAAAGAGGAGAACTAAGGGTGAGAGTGGATGGGAAGAGTACTGATCAAAAGCCAAACACGCCGAGATCAAAACATTCTGCAACTGAGCAGAGGAGAAGAAGCAAAATTAATGACAGATTTCAGATGCTACGACAGCTTATTCCACACAGTGATCAAAAGAGGGACAAAGCATCTTTTCTGTTAGAGGTTATTGAGTATATTCACTTTTTACAAGAGAAAGTACATAAGTATGAAGATTCATTCCAAGGTTGGAATAACGAGCCAGAAAAATTGATGCCATGGAGAAATAATGATAGGCCAGCGGAAAGTTTTCAACCTCGCGGCACAAATAGTGGGTCTAATCCATCTCCAGCATTGCAGTTTGCTTCAAAGATTCAGGAGAAAAACATACCCATCTCTCCAACAATTCATGCCTCTACCCCTAATGTCGAATCTGGCTTGAGCACAACAGCTGCCTTCAAGACAATAGAGCATCAGTCTGGAATACTGAACAAGACTTTTCAAATTCCTACTTCCCAACCAAATATCTTCCCTTCAACCCAAATCGGTGGTTCAGGTGGAGCAGTGTCTCAACTCAGACATAGATTAACATCTGATGCAGAGAACGTCATTTATCAGCCTTCAGTAGAATCTCAGACTATGACTTCTACCAATGAAAAGCTGAAAGAGAAAGAGCTGACTATTGAAGGAGGTGCCATTAGTATATCAAGCGTGTACTCACAAGGGTTGTTGGATACACTTACACACGCATTGCAGACTTCGGGAGTGGATTTGTCACAAGCTAGCATTTCAGTGCAAATTGAACTTGGCAAGCAAGCAAATATCACACCAAACGGACCATTATCCATGTGTGTTTCTAAGGATGATGAAGATCCTTCAAAAAATCAAAGGAAGGTACGTTCTAGAGTCGCCGGCCCTGAGAAGTCTGATCAAGCACTAAAGAAGCTAAAGACATGCCGAAGTTAA 1695 0.4265 MELPQSRPCGAEEAGRKPTHDFLSLYSNSTAEQDPRSSAQASYLKTHDFLRPLEQVETKSSAKEEATDEISSAVQKQPPLPTPASVEHLLPGGIGTYTISHINSYVNNTQRVPKPESSLFTVHQATSADRNDDSNCSSHTSSGFTLWEESEIKKGKTEKENNVGEKPIIGDSAAKLGTWTTERMSQSFSNNHHGSFNSRSSSQTTGQKNQSFMEMMKSAQDCAQDEELENEGTFFLKRETLDTQRGELRVRVDGKSTDQKPNTPRSKHSATEQRRRSKINDRFQMLRQLIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEDSFQGWNNEPEKLMPWRNNDRPAESFQPRGTNSGSNPSPALQFASKIQEKNIPISPTIHASTPNVESGLSTTAAFKTIEHQSGILNKTFQIPTSQPNIFPSTQIGGSGGAVSQLRHRLTSDAENVIYQPSVESQTMTSTNEKLKEKELTIEGGAISISSVYSQGLLDTLTHALQTSGVDLSQASISVQIELGKQANITPNGPLSMCVSKDDEDPSKNQRKVRSRVAGPEKSDQALKKLKTCRS 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01804 564 MobiDBLite consensus disorder prediction 246 280 - -
Vivi1g01804 564 MobiDBLite consensus disorder prediction 331 359 - -
Vivi1g01804 564 MobiDBLite consensus disorder prediction 22 41 - -
Vivi1g01804 564 MobiDBLite consensus disorder prediction 1 41 - -
Vivi1g01804 564 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 261 335 IPR036638 GO:0046983
Vivi1g01804 564 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 15 561 IPR044295 GO:0003700|GO:0006351|GO:0046983
Vivi1g01804 564 SMART finulus 269 319 IPR011598 GO:0046983
Vivi1g01804 564 Pfam Helix-loop-helix DNA-binding domain 265 314 IPR011598 GO:0046983
Vivi1g01804 564 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 263 313 IPR011598 GO:0046983
Vivi1g01804 564 MobiDBLite consensus disorder prediction 521 564 - -
Vivi1g01804 564 FunFam BHLH domain class transcription factor 261 333 - -
Vivi1g01804 564 MobiDBLite consensus disorder prediction 345 359 - -
Vivi1g01804 564 CDD bHLH_AtBIM_like 262 338 - -
Vivi1g01804 564 Gene3D - 261 335 IPR036638 GO:0046983
Vivi1g01804 564 MobiDBLite consensus disorder prediction 185 210 - -
Vivi1g01804 564 MobiDBLite consensus disorder prediction 57 84 - -
Vivi1g01804 564 MobiDBLite consensus disorder prediction 530 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01804 Vivi-Chr1 38371966 38379453 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01804 1 516 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 48.980 5.26e-128 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi1g01804 HLH 4.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01804 - - gmx:100808016 788.875