Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01803 ATGGAGCTTCCTCAATCTCGTCCATGTGGAGCCGAAGAAGCAGGGAGGAAACCGACGCATGATTTTCTGTCGCTATACAGTAATTCAACTGCCGAACAAGATCCAAGGTCTTCTGCTCAAGCAAGTTACCTCAAGACCCATGATTTCTTGCGGCCACTAGAGCAGGTAGAAACAAAATCCAGTGCCAAAGAAGAAGCCACAGATGAAATCTCATCGGCCGTTCAGAAGCAACCGCCTTTACCTACACCAGCTTCAGTTGAGCACCTCTTACCTGGAGGAATTGGGACTTACACTATTAGCCACATTAATTCCTACGTCAATAATACTCAAAGGGTTCCAAAGCCTGAATCATCACTTTTCACTGTGCATCAAGCAACTAGTGCGGATAGAAACGATGACTCCAACTGTAGTTCACATACTTCAAGCGGTTTCACATTATGGGAAGAGTCTGAGATTAAAAAGGGAAAGACAGAAAAGGAGAATAATGTTGGAGAGAAACCCATTATAGGAGTGGCAGATTCTGCTGCTAAGCTGGGGACATGGACAACGGAGCGGATGTCTCAATCCTTTTCTAATAATCATCATGGCAGCTTCAACTCTCGCTCTTCATCTCAGACAACTGGACAGAAGAACCAGAGTTTTATGGAAATGATGAAATCTGCACAGGATTGTGCCCAGGATGAAGAGCTAGAAAATGAAGGAACATTTTTTCTCAAGAGAGAAACCTTGGATACTCAAAGAGGAGAACTAAGGGTGAGAGTGGATGGGAAGAGTACTGATCAAAAGCCAAACACGCCGAGATCAAAACATTCTGCAACTGAGCAGAGGAGAAGAAGCAAAATTAATGACAGATTTCAGATGCTACGACAGCTTATTCCACACAGTGATCAAAAGAGGGACAAAGCATCTTTTCTGTTAGAGGTTATTGAGTATATTCACTTTTTACAAGAGAAAGTACATAAGTATGAAGATTCATTCCAAGGTTGGAATAACGAGCCAGAAAAATTGATGCCATGGCAGAGAAATAATGATAGGCCAGCGGAAAGTTTTCAACCTCGCGGCACAAATAGTGGGTCTAATCCATCTCCAGCATTGCAGTTTGCTTCAAAGATTCAGGAGAAAAACATACCCATCTCTCCAACAATTCATGCCTCTACCCCTAATGTCGAATCTGGCTTGAGCACAACAGCTGCCTTCAAGACAATAGAGCATCAGTCTGGAATACTGAACAAGACTTTTCAAATTCCTACTTCCCAACCAAATATCTTCCCTTCAACCCAAATCGGTGGTTCAGGTGGAGCAGTGTCTCAACTCAGACATAGATTAACATCTGATGCAGAGAACGTCATTTATCAGCCTTCAGTAGAATCTCAGACTATGACTTCTACCAATGAAAAGCTGAAAGAGAAAGAGCTGACTATTGAAGGAGGTGCCATTAGTATATCAAGCGTGTACTCACAAGGGTTGTTGGATACACTTACACACGCATTGCAGACTTCGGGAGTGGATTTGTCACAAGCTAGCATTTCAGTGCAAATTGAACTTGGCAAGCAAGCAAATATCACACCAAACGGACCATTATCCATGTGTGTTTCTAAGGATGATGAAGATCCTTCAAAAAATCAAAGGAAGGTACGTTCTAGAGTCGCCGGCCCTGAGAAGTCTGATCAAGCACTAAAGAAGCTAAAGACATGCCGAAGTTAA 1704 0.4278 MELPQSRPCGAEEAGRKPTHDFLSLYSNSTAEQDPRSSAQASYLKTHDFLRPLEQVETKSSAKEEATDEISSAVQKQPPLPTPASVEHLLPGGIGTYTISHINSYVNNTQRVPKPESSLFTVHQATSADRNDDSNCSSHTSSGFTLWEESEIKKGKTEKENNVGEKPIIGVADSAAKLGTWTTERMSQSFSNNHHGSFNSRSSSQTTGQKNQSFMEMMKSAQDCAQDEELENEGTFFLKRETLDTQRGELRVRVDGKSTDQKPNTPRSKHSATEQRRRSKINDRFQMLRQLIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEDSFQGWNNEPEKLMPWQRNNDRPAESFQPRGTNSGSNPSPALQFASKIQEKNIPISPTIHASTPNVESGLSTTAAFKTIEHQSGILNKTFQIPTSQPNIFPSTQIGGSGGAVSQLRHRLTSDAENVIYQPSVESQTMTSTNEKLKEKELTIEGGAISISSVYSQGLLDTLTHALQTSGVDLSQASISVQIELGKQANITPNGPLSMCVSKDDEDPSKNQRKVRSRVAGPEKSDQALKKLKTCRS 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01803 567 SMART finulus 271 321 IPR011598 GO:0046983
Vivi1g01803 567 MobiDBLite consensus disorder prediction 1 84 - -
Vivi1g01803 567 MobiDBLite consensus disorder prediction 22 44 - -
Vivi1g01803 567 CDD bHLH_AtBIM_like 264 340 - -
Vivi1g01803 567 Gene3D - 263 337 IPR036638 GO:0046983
Vivi1g01803 567 MobiDBLite consensus disorder prediction 533 567 - -
Vivi1g01803 567 MobiDBLite consensus disorder prediction 187 212 - -
Vivi1g01803 567 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 15 564 IPR044295 GO:0003700|GO:0006351|GO:0046983
Vivi1g01803 567 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 265 315 IPR011598 GO:0046983
Vivi1g01803 567 FunFam BHLH domain class transcription factor 263 335 - -
Vivi1g01803 567 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 263 337 IPR036638 GO:0046983
Vivi1g01803 567 MobiDBLite consensus disorder prediction 333 364 - -
Vivi1g01803 567 MobiDBLite consensus disorder prediction 248 282 - -
Vivi1g01803 567 MobiDBLite consensus disorder prediction 524 567 - -
Vivi1g01803 567 MobiDBLite consensus disorder prediction 344 364 - -
Vivi1g01803 567 MobiDBLite consensus disorder prediction 50 70 - -
Vivi1g01803 567 Pfam Helix-loop-helix DNA-binding domain 267 316 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01803 Vivi-Chr1 38371966 38379453 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01803 1 519 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 49.353 4.70e-130 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi1g01803 HLH 4.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01803 - - gmx:100808016 790.801