Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01802 ATGGAGCTTCCTCAATCTCGTCCATGTGGAGCCGAAGAAGCAGGGAGGAAACCGACGCATGATTTTCTGTCGCTATACAGTAATTCAACTGCCGAACAAGATCCAAGGTCTTCTGCTCAAGCAAGTTACCTCAAGACCCATGATTTCTTGCGGCCACTAGAGCAGGTAGAAACAAAATCCAGTGCCAAAGAAGAAGCCACAGATGAAATCTCATCGGCCGTTCAGAAGCAACCGCCTTTACCTACACCAGCTTCAGTTGAGCACCTCTTACCTGGAGGAATTGGGACTTACACTATTAGCCACATTAATTCCTACGTCAATAATACTCAAAGGGTTCCAAAGCCTGAATCATCACTTTTCACTGTGCATCAAGCAACTAGTGCGGATAGAAACGATGACTCCAACTGTAGTTCACATACTTCAAGCGGTTTCACATTATGGGAAGAGTCTGAGATTAAAAAGGGAAAGACAGAAAAGGAGAATAATGTTGGAGAGAAACCCATTATAGGAGATTCTGCTGCTAAGCTGGGGACATGGACAACGGAGCGGATGTCTCAATCCTTTTCTAATAATCATCATGGCAGCTTCAACTCTCGCTCTTCATCTCAGACAACTGGACAGAAGAACCAGAGTTTTATGGAAATGATGAAATCTGCACAGGATTGTGCCCAGGATGAAGAGCTAGAAAATGAAGGAACATTTTTTCTCAAGAGAGAAACCTTGGATACTCAAAGAGGAGAACTAAGGGTGAGAGTGGATGGGAAGAGTACTGATCAAAAGCCAAACACGCCGAGATCAAAACATTCTGCAACTGAGCAGAGGAGAAGAAGCAAAATTAATGACAGATTTCAGATGCTACGACAGCTTATTCCACACAGTGATCAAAAGAGGGACAAAGCATCTTTTCTGTTAGAGGTTATTGAGTATATTCACTTTTTACAAGAGAAAGTACATAAGTATGAAGATTCATTCCAAGGTTGGAATAACGAGCCAGAAAAATTGATGCCATGGCAGAGAAATAATGATAGGCCAGCGGAAAGTTTTCAACCTCGCGGCACAAATAGTGGGTCTAATCCATCTCCAGCATTGCAGTTTGCTTCAAAGATTCAGGAGAAAAACATACCCATCTCTCCAACAATTCATGCCTCTACCCCTAATGTCGAATCTGGCTTGAGCACAACAGCTGCCTTCAAGACAATAGAGCATCAGTCTGGAATACTGAACAAGACTTTTCAAATTCCTACTTCCCAACCAAATATCTTCCCTTCAACCCAAATCGGTGGTTCAGGTGGAGCAGTGTCTCAACTCAGACATAGATTAACATCTGATGCAGAGAACGTCATTTATCAGCCTTCAGTAGAATCTCAGACTATGACTTCTACCAATGAAAAGCTGAAAGAGAAAGAGCTGACTATTGAAGGAGGTGCCATTAGTATATCAAGCGTGTACTCACAAGGGTTGTTGGATACACTTACACACGCATTGCAGACTTCGGGAGTGGATTTGTCACAAGCTAGCATTTCAGTGCAAATTGAACTTGGCAAGCAAGCAAATATCACACCAAACGGACCATTATCCATGTGTGTTTCTAAGGATGATGAAGATCCTTCAAAAAATCAAAGGAAGGTACGTTCTAGAGTCGCCGGCCCTGAGAAGTCTGATCAAGCACTAAAGAAGCTAAAGACATGCCGAAGTTAA 1698 0.427 MELPQSRPCGAEEAGRKPTHDFLSLYSNSTAEQDPRSSAQASYLKTHDFLRPLEQVETKSSAKEEATDEISSAVQKQPPLPTPASVEHLLPGGIGTYTISHINSYVNNTQRVPKPESSLFTVHQATSADRNDDSNCSSHTSSGFTLWEESEIKKGKTEKENNVGEKPIIGDSAAKLGTWTTERMSQSFSNNHHGSFNSRSSSQTTGQKNQSFMEMMKSAQDCAQDEELENEGTFFLKRETLDTQRGELRVRVDGKSTDQKPNTPRSKHSATEQRRRSKINDRFQMLRQLIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEDSFQGWNNEPEKLMPWQRNNDRPAESFQPRGTNSGSNPSPALQFASKIQEKNIPISPTIHASTPNVESGLSTTAAFKTIEHQSGILNKTFQIPTSQPNIFPSTQIGGSGGAVSQLRHRLTSDAENVIYQPSVESQTMTSTNEKLKEKELTIEGGAISISSVYSQGLLDTLTHALQTSGVDLSQASISVQIELGKQANITPNGPLSMCVSKDDEDPSKNQRKVRSRVAGPEKSDQALKKLKTCRS 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01802 565 MobiDBLite consensus disorder prediction 1 84 - -
Vivi1g01802 565 MobiDBLite consensus disorder prediction 22 44 - -
Vivi1g01802 565 MobiDBLite consensus disorder prediction 331 362 - -
Vivi1g01802 565 MobiDBLite consensus disorder prediction 246 280 - -
Vivi1g01802 565 MobiDBLite consensus disorder prediction 522 565 - -
Vivi1g01802 565 MobiDBLite consensus disorder prediction 342 362 - -
Vivi1g01802 565 SMART finulus 269 319 IPR011598 GO:0046983
Vivi1g01802 565 Pfam Helix-loop-helix DNA-binding domain 265 314 IPR011598 GO:0046983
Vivi1g01802 565 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 263 313 IPR011598 GO:0046983
Vivi1g01802 565 FunFam BHLH domain class transcription factor 261 333 - -
Vivi1g01802 565 CDD bHLH_AtBIM_like 262 338 - -
Vivi1g01802 565 Gene3D - 261 335 IPR036638 GO:0046983
Vivi1g01802 565 MobiDBLite consensus disorder prediction 531 565 - -
Vivi1g01802 565 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 261 335 IPR036638 GO:0046983
Vivi1g01802 565 MobiDBLite consensus disorder prediction 185 210 - -
Vivi1g01802 565 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 15 562 IPR044295 GO:0003700|GO:0006351|GO:0046983
Vivi1g01802 565 MobiDBLite consensus disorder prediction 50 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01802 Vivi-Chr1 38371965 38379453 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01802 1 517 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 49.259 2.65e-129 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi1g01802 HLH 4.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01802 - - gmx:100808016 784.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01802 1 38371965 38379453 Vivi1g01802 1 38371965 38379453 ECH