Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01797 ATGGCGAGTTCTTCGCCTTCATCCGGCAAACGCCCCAAATCCGAAGCAGAATCCGACGAAGAAAACAAAAAGGAGCAGGATGATTGCTGCGGAATTTGCTACGCCGAACGCGGAGTTTCAGTTCCAGGTGAAATTGATTCCTGCAACCACTATTTTTGCTTCGTTTGCATCATGGAATGGGCCAAACACGAATCTAGATGCCCAATCTGTCGCCAGAGATTCTCCATCGTTCGTAGACTCCCTAAGCTTGGCGTCTTTTCTTCCTCTCGGGACGTTAAGGTCCCTCTTCGTGACCAGGTTTATCATCCTCATGGAAATATGACTAGTGGTCCTGTTGGTTCTAATGCTGAACTCAAATGCTGTGTTTGCCTTGTTGCGAAAGATGAAAATCTTATAATAATATGCGACCTTTGCGATATGGCTTCACATACTTATTGCGTTGGCTTGGGCTACTCCGTTCCTGAAGGTGATTGGTTTTGTCATGATTGTGCTGTTTCACGCGAGACTAATGCTAATGATGGGTTAGACTTAGACCAACAAACTGTTGAGTTGACGGCTGAGCCTGGTGTAACTGTTTTAGATATCGTGAGAGAAACAGGTAGCCACGTGGCTAGAAGACCAATGATATCTTCTATTCGACAAAACAATTCTTTATCTACTGCTATTCCTTTAGTTGATAGAGTGAATAGATCCGAAGGGAAAAAACCTGTGACGAATGAACAACGTGCGCAATGTAATGTTCAGGCGCTTCGTGAAAATTGGAATTCTTTGAGAAGTGGTTCATTGAAGTTCGATAGAAAATCATTTCAATCTGGTGGCACGAGTAGTCAAAAACATGATTCTAGTTCTTTATCACGTGGTGGTTCACACTCGATTGCTTCCACAGGCCGTCAACAATCCACAGTTCAAGGCGCTCAATCTAGTAACATGGGGAATGATGGTGACTTGAAATATGATGTTCACAAAGCTTGGCAAATGATGGATAGAGCAAAGACGGTGAAACAGACTCCTAGAAGAACTAGCAGAATTACACAGGTAGTGGATGATGATCCCTCGTGTAGTGGCGCTAAAGAAAAATCATTTGCACCTCGTAGTTGCCTAGAATTAAAAAATCTACAGCCTAGAACATTAGACTTTAGATGCACCAGAATGGAGGAGCAGTGTGGCTATTCTAGTCTTACAAAAAAATTGGAAAATCACTTGTCTCCTTTGTTGGGAGAAAAAAGGAAAAGTAGGGTCTTATGCGAGGAGAAGATACAGCATTTGAAGGACCATACTAGTACTAGTCATTCTGTAAGATGCAGGGAACGACCATTGCTCGGTAAGGCCCATACTGGTACCCACAGTGCTCCCCGTGACGATGATAGAAATTCTGCGAGGGAACAGGGGCAGTCTGCTTACTTGGTAACTTCAGTAGTAGGTTCAGCATCATCTAGTGGCAAATCTGACAGTTTGTGCGCCTCTAATAAGGATGTGGATATTTTCAATAAAGAAAAGAGATTTAAAGGCTTTGGGAATGAGATCACAAAAAATACTGAAGATGCAAAAACAGAAATCCAGTCTCTTGTTAAACTGAATCTGAAGTGCTTAACTAGAGATAAACAATTAGGTGTCGAAACTTTCAAGGGAGTTGCGAGGAAAGCCACACATACCATCTTGGCTGCTTGCCATTCTGAGCAGCACAAGTCTAATATATGCTCCTCAAGCTCTGTATGCAGCCATACTGACCATATTACACAGTTTCAGCAGTCCACTTTAATGCCCAATTGTTGCCGACAATGTTTTCAGGTCTATGTGAACGATGTTGTCAAATCCATCATGTTGGAAAAAGCAAATATGAATATTGCCTTAGGGGGAAAAGGTATTATAGAGATACAGAGCACAGCCTAA 1890 0.4249 MASSSPSSGKRPKSEAESDEENKKEQDDCCGICYAERGVSVPGEIDSCNHYFCFVCIMEWAKHESRCPICRQRFSIVRRLPKLGVFSSSRDVKVPLRDQVYHPHGNMTSGPVGSNAELKCCVCLVAKDENLIIICDLCDMASHTYCVGLGYSVPEGDWFCHDCAVSRETNANDGLDLDQQTVELTAEPGVTVLDIVRETGSHVARRPMISSIRQNNSLSTAIPLVDRVNRSEGKKPVTNEQRAQCNVQALRENWNSLRSGSLKFDRKSFQSGGTSSQKHDSSSLSRGGSHSIASTGRQQSTVQGAQSSNMGNDGDLKYDVHKAWQMMDRAKTVKQTPRRTSRITQVVDDDPSCSGAKEKSFAPRSCLELKNLQPRTLDFRCTRMEEQCGYSSLTKKLENHLSPLLGEKRKSRVLCEEKIQHLKDHTSTSHSVRCRERPLLGKAHTGTHSAPRDDDRNSAREQGQSAYLVTSVVGSASSSGKSDSLCASNKDVDIFNKEKRFKGFGNEITKNTEDAKTEIQSLVKLNLKCLTRDKQLGVETFKGVARKATHTILAACHSEQHKSNICSSSSVCSHTDHITQFQQSTLMPNCCRQCFQVYVNDVVKSIMLEKANMNIALGGKGIIEIQSTA 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01797 629 Pfam Ring finger domain 29 71 IPR001841 -
Vivi1g01797 629 MobiDBLite consensus disorder prediction 1 22 - -
Vivi1g01797 629 ProSitePatterns Zinc finger RING-type signature. 48 57 IPR017907 -
Vivi1g01797 629 ProSiteProfiles Zinc finger PHD-type profile. 117 166 IPR019787 -
Vivi1g01797 629 MobiDBLite consensus disorder prediction 265 313 - -
Vivi1g01797 629 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 79 IPR013083 -
Vivi1g01797 629 MobiDBLite consensus disorder prediction 426 463 - -
Vivi1g01797 629 Pfam PHD-finger 120 164 IPR019787 -
Vivi1g01797 629 ProSiteProfiles Zinc finger RING-type profile. 30 71 IPR001841 -
Vivi1g01797 629 MobiDBLite consensus disorder prediction 265 316 - -
Vivi1g01797 629 MobiDBLite consensus disorder prediction 426 460 - -
Vivi1g01797 629 SMART PHD_3 119 164 IPR001965 -
Vivi1g01797 629 MobiDBLite consensus disorder prediction 331 356 - -
Vivi1g01797 629 SUPERFAMILY RING/U-box 21 84 - -
Vivi1g01797 629 SMART ring_2 30 70 IPR001841 -
Vivi1g01797 629 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 175 IPR013083 -
Vivi1g01797 629 PANTHER F18C1.6 PROTEIN 9 611 - -
Vivi1g01797 629 SUPERFAMILY FYVE/PHD zinc finger 114 165 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01797 Vivi-Chr1 38288570 38293832 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01797 120 167 C2H2 Transcription Factor Family AT3G01460 38.776 1.30e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi1g01797 PHD 1.5e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01797 - - vvo:131634523 1245.34