Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01794 ATGGCTGATGTAACCTATCTCCGCCACCACCACGAACCCGACGACGATCCAACCCTTATCCCTTTACCCTATTGGTCTTCCCCTTCCGATTTCGATCTCGATTTTGATCTCGATTTATACTCCTCCGATCTCGATTTCCATCCCCACCACCACCATCACCATTTCTCTCGTGAAAATTTCGTCATGGATCTCTTTCAACAGCGTGTAGAGCAATCTCACGTCACCGATTATACCGATAGTATTCATCAATCTCTAAACGACTCCGTTTTCGATGGTCTAAGTCTCGATTTAGGATTAAATTCCACCGATCTATATTTCGCTGAAGACGATTTTACCGATATGAGGGTTTCGAGATCAGATCCAATCAACGGTCTGCGTATCGTTGAGATTGATTCGGAATCTGATGGTGAGGAAGTAATCGGAAACGGAAATGAAAACATCAACGCGTTGTACGGGATCTGCGTGCATTCTGATGAAGAAGAGTTTAGCAATGTAATCGACGATGTTACGAGTTTTCCTTTCCGTTGGGATTCTCTTCAGTTGGATGATAATCAGGTATATGAAGATTTTGATTGGGAGGAAGTTGATGGTCGTTTGGATGGTATGTCGGCCGGTAACGGTAACAGTAGGTCAGTTAGCGCTCTTCGCGATTTTCCGTATATAGAAGAAGATTTGGAAGATGGAGGGGAGGTTACCTTGACAAGAATTGGTGAAGACATGGGAAATCTCGAGTGGCAAGTGTTACCGAATTCAAATAATTTAGGCACAAGCCCTGATACCTACCATGTAATTGCGGAGCCGTTTGAGGATAATGATGATTACATTCACACTGCAGAGTATGAGATGATGTTTGGTCAAATCATCGGTAATGATAACCCTTCAGCGGGGAGGCCTCCGGCTTCTGTAACTGTCGTGCAAAACCTTCCGTTGGTGGTTGTGACGAAAGATGATGTGGACAACAACAATGCTCTGTGTGCTGTTTGTAAAGATGAATTTGCTGTTGGAGATGAGGTGAAGTTGTTGCCGTGTTCTCATCGCTACCATGGCGATTGCATTGTGCCGTGGTTGGGGATTAGGAATACTTGTCCTGTTTGTCGCTATGAGTTCCCCACAGATGATGCTGATTATGAACGTAGGAAAGCGCCGATGTTGGCACGGAGCGCTTGA 1167 0.4499 MADVTYLRHHHEPDDDPTLIPLPYWSSPSDFDLDFDLDLYSSDLDFHPHHHHHHFSRENFVMDLFQQRVEQSHVTDYTDSIHQSLNDSVFDGLSLDLGLNSTDLYFAEDDFTDMRVSRSDPINGLRIVEIDSESDGEEVIGNGNENINALYGICVHSDEEEFSNVIDDVTSFPFRWDSLQLDDNQVYEDFDWEEVDGRLDGMSAGNGNSRSVSALRDFPYIEEDLEDGGEVTLTRIGEDMGNLEWQVLPNSNNLGTSPDTYHVIAEPFEDNDDYIHTAEYEMMFGQIIGNDNPSAGRPPASVTVVQNLPLVVVTKDDVDNNNALCAVCKDEFAVGDEVKLLPCSHRYHGDCIVPWLGIRNTCPVCRYEFPTDDADYERRKAPMLARSA 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01794 388 CDD RING-H2_RNF126-like 325 366 - -
Vivi1g01794 388 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 208 370 - -
Vivi1g01794 388 SMART ring_2 325 365 IPR001841 -
Vivi1g01794 388 Pfam Ring finger domain 325 366 IPR001841 -
Vivi1g01794 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 372 IPR013083 -
Vivi1g01794 388 ProSiteProfiles Zinc finger RING-type profile. 325 366 IPR001841 -
Vivi1g01794 388 SUPERFAMILY RING/U-box 305 372 - -
Vivi1g01794 388 FunFam E3 ubiquitin-protein ligase RING1-like 286 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01794 Vivi-Chr1 38274010 38275454 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01794 19 372 C3H Transcription Factor Family AT5G60820 36.250 7.13e-50 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01794 - - mtr:25493924 485.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01794 1 38274010 38275454 Vivi1g01794 1 38274010 38275454 ECH