Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01778 ATGGCACAAACCGTTGTTTCCGGCGCCGAATCGCCTCGCCGTCGTCATGGTTTACTCCGCGATCAAGTTCAATTAGTTAAACGAAAAGATTCTTCCGATCGCTATGAAATTGTTCCGATTCAAGATTCTTTATCGTTTGAGAAAGGATTCTTCATTGTTATTCGTGCTTGTCAGTTATTGGCTCAAAACAATGATGGAATTGTGTTGGTAGGAGTTGCAGGTCCTTCTGGAGCGGGGAAAACTGTTTTTACTGATAAGGTTTTCAGTTTCATGCCGAGTATTGCTGTTATAAGCATGGACAATTATAATGATGCTAGTCGAATCATTGATGGAAACTATGATGACCCTCGATTGACGGATTATGACACCTTGCTAAAAAATATACAGGATCTTAAATCAGGGAAGCCTGTTCAGGTTCCAATATACGATTTCAAGTCTAGTTCTCGCATCGGATACAGAACTATTGAAGTCCCTAGCTCCCGTATCGTAATCATTGAAGGCATCTATGCCTTAAGTGAAAAATTGCGACCATTGCTTGATCTTCGTGTTTCTGTCACCGGTGGAGTTCATTTTGACCTTGTCAAGCGTGTTCTGCGGGACATTCAACGAGCTGGTCAAGAGCCTGAAGAAATAATTCATCAAATCTCTGAAACGGTATATCCCATGTATAAAGCTTTTATAGAGCCAGATCTCCAAACAGCGCATATAAAAATTAGTAACAAGTTTAATCCATTCACTGGATTCCAGAATCCCACCTACATATTGAAGTCAGCAAAAGTTGTGACAGTGGATCAAATCAAGGCAGTTATTGCTGCAGAGTATACTGAAACCAAAGAGGAAACATATGACATTTATCTTCTACCCCCCGGAGACGACCCTGAAGCATGCCAATCATATTTGAGAATGAGAAACCGGGATGGAAAATACAATCTTATGTTTGAGGAATGGGTTACGGATAGTCCATTCATTATATCACCTAGAATTACTTTTGAGGTCAGTGTGCGTCTGCTTGGAGGGCTGATGGCCTTGGGGTATACAATTGCAGCAATCCTGAAAAGAAGCAGCCATATCTTTCACGACAATAAAGTGTCCATAAAAACTGATTGGTTAGAACAACTTAATCGCCAATATGTCCAGGTGCAAGGGAAAGATAGAAACTATGTTAAGTTTGTAGCGCAGAAACTGGGTTTGGATGGTTCCTATGTTCCTCGCACTTACATTGAACAAATTCAGCTAGAAAAGCTTGTAAATGATGTGATGACACTGCCAGATGATCTGAAGACAAAACTAAGCATAGACGATGATTCAGTTTCAAGCCCCAAAGAAGCACTTTCTAGAGCTTCTGCAGATAGGAGAATGAAATATCTTAATCGTGATATTTCACAGTCATTTTCAAATCGAAGAGACAAGATTCTACCTAAGTTGACTAAACTTGCTATAAATAACAGAAGTTTTAATGCGAGAGCTTTAGAATCACCTGCTCCCATGGCTAACCAACTGGCAGGGAGTTATCATTCAACTGTCTGA 1527 0.4028 MAQTVVSGAESPRRRHGLLRDQVQLVKRKDSSDRYEIVPIQDSLSFEKGFFIVIRACQLLAQNNDGIVLVGVAGPSGAGKTVFTDKVFSFMPSIAVISMDNYNDASRIIDGNYDDPRLTDYDTLLKNIQDLKSGKPVQVPIYDFKSSSRIGYRTIEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKISNKFNPFTGFQNPTYILKSAKVVTVDQIKAVIAAEYTETKEETYDIYLLPPGDDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIAAILKRSSHIFHDNKVSIKTDWLEQLNRQYVQVQGKDRNYVKFVAQKLGLDGSYVPRTYIEQIQLEKLVNDVMTLPDDLKTKLSIDDDSVSSPKEALSRASADRRMKYLNRDISQSFSNRRDKILPKLTKLAINNRSFNARALESPAPMANQLAGSYHSTV 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01778 508 ProSiteProfiles CYTH domain profile. 250 412 IPR023577 -
Vivi1g01778 508 Gene3D - 255 410 - -
Vivi1g01778 508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 240 IPR027417 -
Vivi1g01778 508 Pfam CYTH domain 274 406 IPR023577 -
Vivi1g01778 508 CDD UMPK_like 69 241 - -
Vivi1g01778 508 PRINTS Uridine kinase signature 190 200 - -
Vivi1g01778 508 PRINTS Uridine kinase signature 226 239 - -
Vivi1g01778 508 PRINTS Uridine kinase signature 67 84 - -
Vivi1g01778 508 PRINTS Uridine kinase signature 134 149 - -
Vivi1g01778 508 Pfam Phosphoribulokinase / Uridine kinase family 70 238 IPR006083 GO:0005524|GO:0016301
Vivi1g01778 508 SUPERFAMILY CYTH-like phosphatases 262 409 IPR033469 -
Vivi1g01778 508 PANTHER URIDINE KINASE 15 425 - -
Vivi1g01778 508 Gene3D - 68 249 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01778 Vivi-Chr1 38076968 38083235 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01778 69 238 PRT Gene Family AT5G40870 27.933 2.52e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01778 K00876 - gmx:100811230 885.56