Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01777 ATGATGCTAGTCGAATCATTGATGGAAACTATGATGGATCTTAAATCAGGGAAGCCTGTTCAGGTTCCAATATACGATTTCAAGTCTAGTTCTCGCATCGGATACAGAACTATTGAAGTCCCTAGCTCCCGTATCGTAATCATTGAAGGCATCTATGCCTTAAGTGAAAAATTGCGACCATTGCTTGATCTTCGTGTTTCTGTCACCGGTGGAGTTCATTTTGACCTTGTCAAGCGTGTTCTGCGGGACATTCAACGAGCTGGTCAAGAGCCTGAAGAAATAATTCATCAAATCTCTGAAACGGTATATCCCATGTATAAAGCTTTTATAGAGCCAGATCTCCAAACAGCGCATATAAAAATTAGTAACAAGTTTAATCCATTCACTGGATTCCAGAATCCCACCTACATATTGAAGTCAGCAAAAGTTGTGACAGTGGATCAAATCAAGGCAGTTATTGCTGCAGAGTATACTGAAACCAAAGAGGAAACATATGACATTTATCTTCTACCCCCCGGAGACGACCCTGAAGCATGCCAATCATATTTGAGAATGAGAAACCGGGATGGAAAATACAATCTTATGTTTGAGGAATGGGTTACGGATAGTCCATTCATTATATCACCTAGAATTACTTTTGAGGTCAGTGTGCGTCTGCTTGGAGGGCTGATGGCCTTGGGGTATACAATTGCAGCAATCCTGAAAAGAAGCAGCCATATCTTTCACGACAATAAAGTGTCCATAAAAACTGATTGGTTAGAACAACTTAATCGCCAATATGTCCAGGTGCAAGGGAAAGATAGAAACTATGTTAAGTTTGTAGCGCAGAAACTGGGTTTGGATGGTTCCTATGTTCCTCGCACTTACATTGAACAAATTCAGCTAGAAAAGCTTGTAAATGATGTGATGACACTGCCAGATGATCTGAAGACAAAACTAAGCATAGACGATGATTCAGTTTCAAGCCCCAAAGAAGCACTTTCTAGAGCTTCTGCAGATAGGAGAATGAAATATCTTAATCGTGATATTTCACAGTCATTTTCAAATCGAAGAGACAAGATTCTACCTAAGTTGACTAAACTTGCTATAAATAACAGAAGTTTTAATGCGAGAGCTTTAGAATCACCTGCTCCCATGGCTAACCAAGGAGTTATCATTCAACTGTCTGATCAAATTTCCACCCTAAATGAAAGAATGGACGAGTTCACCTCCCGTATTGAAGAGCTGAATTCAAACTTCGATGTTAAAAAAATTTCAGCCAGTCAACAAAACATGGCTTTACAGGCTGAGACCTGCAATGGCTCCGGCCCCACTTCTCACTTTGTTACTGGATTAAGCAATGGTTCATTGACTGGATCATTACTTCCTAATTCTCTGTCATCCTCTCAATTGGTTAGAGAGTCTCCGCTAATGGAAGAGGTATTACTTGTTGCCCGAGGACAACGTCAAATCATGCATCAACTAGACACTCTGAGCAATCTTATGCAGGAATACTTAGGAGAAAAATCGCGGCTGGGAAGAGCAGACCAGGCAGGCAAAATACGTGGAGTTGAATCCTTTGCCATCCCTATGGTTCTGTCTTTAGCCATTGGTGCTGTTGGCGTGTTCTTATTCAAGGGTTTGACAGCTAAAAAATAA 1638 0.4078 MMLVESLMETMMDLKSGKPVQVPIYDFKSSSRIGYRTIEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKISNKFNPFTGFQNPTYILKSAKVVTVDQIKAVIAAEYTETKEETYDIYLLPPGDDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIAAILKRSSHIFHDNKVSIKTDWLEQLNRQYVQVQGKDRNYVKFVAQKLGLDGSYVPRTYIEQIQLEKLVNDVMTLPDDLKTKLSIDDDSVSSPKEALSRASADRRMKYLNRDISQSFSNRRDKILPKLTKLAINNRSFNARALESPAPMANQGVIIQLSDQISTLNERMDEFTSRIEELNSNFDVKKISASQQNMALQAETCNGSGPTSHFVTGLSNGSLTGSLLPNSLSSSQLVRESPLMEEVLLVARGQRQIMHQLDTLSNLMQEYLGEKSRLGRADQAGKIRGVESFAIPMVLSLAIGAVGVFLFKGLTAKK 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01777 545 SUPERFAMILY CYTH-like phosphatases 145 292 IPR033469 -
Vivi1g01777 545 Gene3D - 2 132 IPR027417 -
Vivi1g01777 545 PANTHER URIDINE KINASE 5 308 - -
Vivi1g01777 545 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 123 IPR027417 -
Vivi1g01777 545 Gene3D - 138 293 - -
Vivi1g01777 545 CDD UMPK_like 5 124 - -
Vivi1g01777 545 ProSiteProfiles CYTH domain profile. 133 295 IPR023577 -
Vivi1g01777 545 Pfam CYTH domain 157 289 IPR023577 -
Vivi1g01777 545 Coils Coil 385 412 - -
Vivi1g01777 545 Pfam Phosphoribulokinase / Uridine kinase family 6 121 IPR006083 GO:0005524|GO:0016301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01777 Vivi-Chr1 38076262 38082779 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01777 5 121 PRT Gene Family AT5G40870 31.356 1.65e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01777 K00876 - gmx:100803122 903.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01777 1 38076262 38082779 Vivi1g01777 1 38076262 38082779 ECH
Vivi5g03812 5 132251812 132272675 Vivi1g01777 1 38076262 38082779 PCT